Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0716 ATGGCTCCGCTCTCACAAGAAACCATAGCAAGACTAAAAGAATACAACTATTCTCCACTCATATTCGAGACTGAACGTCAAGCCACTTTGATTCTACAACGTCTTGATAAATTTCGAGATCTTAACAATAATCATGTAGGAGCAACGTTGAATAATACTCTCCAACAACAACAACTAAGAGAAAAGTTGAATACTTTGCAACAACAAGTCCAACTCAGACAACAGCAACAATTCCAACTCGGACAGCAGAAACGTCTTAACAGTATAGTTGCACAAAAGGATGGGAAGAAAATAAAGAATGAAGCTGAAGTAATTGCACCTGTCGTACCACAATACATCAACAAGCTCTACGGTGTCCCCGCTTTTGTCCCCCCTATTAACAACAATGTGAGCAATATTGGAAATAATGCACCGATTAACTCCAATGTAAGCAAGATTGGAAATGGCGCACCTATTAACAACAATGTGAGCAAGATTGGAAATAGTGCACCTATTAACAACAATTGGAGCAATACTGGAAATTATTCTTCCCAATTTACCAACATATGGGATAGAGCTACAAATAATAAATGTGTGGATGACCTGCGTGGTCCTGATGGTCAACTTCCTGAGAAGTTGAGGAATGTAACACCTCACCACATTGAACATGTCAGCAACGAGATTATGATTAAAAATCCCAATGTCCACTGGGATGATATTGCTGGACTGGCCCATGCCAAAAAATGTGTCAACGAGATGGCCATATATCCTCTGCGACGTCCTGACTTATTTATGGGCTGCCGTTCTCCTGGGAAAGGTCTGCTGCTATTCGGTCCACCAGGAACTGGTAAAACAATGATTGGAAAAGCCATAGCTGGGGAGGCAAAGGCAGCCTTCTTTTACATATCTGCAAGCTCGCTATCTAGCAAATGGTATGGTGAAGGTGAAAAGCTAGTAAGAGCCCTCTTTGGAGTGGCCAGTTGTCGTCAGCCAGCAGTAATATTTGTTGATGAAATAGATTCGCTCTTGTCTCAGAGAATGTCAAATGGTAATGAGCATGAAGCATCTAGACGTATCAAGACACAGTTTCTTATTGAAATGGAAGGCTTTGACGGTGGTGACGACCAAGTCTTGGTTATTGGCGCAACAAATCGTCCGCAAGATCTTGATGAAGCAGCACGAAGGAGACTTACTAAACGACTGTACATTCCCCTACCATCGTCAGAGGCAAGAGCTTGGATTGTACGTAACCTTTTAGAGAAGGATGGCTTATTCAAGATATCAAATGAGGAAATGGAGATTATATGCAACTTAACAGAAGGTTATTCAGGATCAGACATGAAAAACTTAGTGAAGGATGCTTCTATGGGTCCACTAAGAGAGGCAATGGAACAAGGTATAGATATTATGGAGTTGAAAAAAGAGGATATGAGGCCAGTAACTCTTCAGGACTTCAAGAATTCCCTGCAAGAGATAAGGCCTTCTGTTTCACCTAATGAACTTGGCACTTTTGAGCAATGGAACAAGCAATTTGGAACCCTAGCTGTTTAG 1530 0.4144 MAPLSQETIARLKEYNYSPLIFETERQATLILQRLDKFRDLNNNHVGATLNNTLQQQQLREKLNTLQQQVQLRQQQQFQLGQQKRLNSIVAQKDGKKIKNEAEVIAPVVPQYINKLYGVPAFVPPINNNVSNIGNNAPINSNVSKIGNGAPINNNVSKIGNSAPINNNWSNTGNYSSQFTNIWDRATNNKCVDDLRGPDGQLPEKLRNVTPHHIEHVSNEIMIKNPNVHWDDIAGLAHAKKCVNEMAIYPLRRPDLFMGCRSPGKGLLLFGPPGTGKTMIGKAIAGEAKAAFFYISASSLSSKWYGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRMSNGNEHEASRRIKTQFLIEMEGFDGGDDQVLVIGATNRPQDLDEAARRRLTKRLYIPLPSSEARAWIVRNLLEKDGLFKISNEEMEIICNLTEGYSGSDMKNLVKDASMGPLREAMEQGIDIMELKKEDMRPVTLQDFKNSLQEIRPSVSPNELGTFEQWNKQFGTLAV* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0716 509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 226 504 IPR027417 -
Mtr6g0716 509 Pfam Vps4 C terminal oligomerisation domain 470 505 IPR015415 -
Mtr6g0716 509 Gene3D - 226 501 IPR027417 -
Mtr6g0716 509 Coils Coil 56 76 - -
Mtr6g0716 509 Pfam AAA+ lid domain 431 461 IPR041569 -
Mtr6g0716 509 SMART AAA_5 263 400 IPR003593 -
Mtr6g0716 509 ProSitePatterns AAA-protein family signature. 370 389 IPR003960 GO:0005524|GO:0016887
Mtr6g0716 509 Gene3D - 399 485 - -
Mtr6g0716 509 Pfam ATPase family associated with various cellular activities (AAA) 267 398 IPR003959 GO:0005524|GO:0016887
Mtr6g0716 509 CDD AAA 260 398 - -
Mtr6g0716 509 PANTHER AAA DOMAIN-CONTAINING 104 506 - -
Mtr6g0716 509 PANTHER FIDGETIN-LIKE PROTEIN 1 104 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0716 Mtr-Chr6 8653701 8658026 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0716 220 507 Calmodulin-binding Proteins AT3G56690 32.534 1.00e-41 158