Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0677 ATGGTAGTTGATCTCTCTCCTCGATCATCCAAACGAAGAAGAATCACCAACCCTTATTCAATGGACAAAATTGCAGAGATGCATGAAAAATTTGGACGCGAAATTCGTGTTTTTGAAACAATGTCACTTTCTGCATCACCAAATGATGCAGCAAACAAAGAGGAGACAGAAGAGTTCTATGAGTTTACTGCTGAAGATTATTACAAAATCTTGGCTACGAAAAAGGAAGATAATTTCCTGAAGACTCGAAAACTTCGAGATGCAGATCTGGCAGCTCGCAGGTCCAGAATAACAAAGGCTGTAATTAGAGTTCGCTTCCCTGATAATCACACACTGGAAGCTACCTTCCATCCATCAGAAACCATTCAGAGTTTAATTGATCTCCTCAAGAAAGTGATTGCACAACCAGAGAAGCCATTTTATTTATATACTACTCCACCTAAGAAGCTGGTCAAAGATATTTCCCAGGATTTCTATACTGTTGGATTTTGCCCTGGTGCCATTGTGTACTTCTCATATGATGTTTCAAAAGGTGATAGCAGCGACGATGGCCCTTACCTACCTGAAGAGGTCATGTCTTTGAAAGGTTTGAATTTCTCTGACGATAAAGGCCAGTCGTCAAATCCTGCACAGTCTGAGCCGGTGTCTGCTGAGCCTGTCGTGCAACCTCCTGCTGAAGAGAGAAAACCGGCGGAGAAAAAACTTGTCAAGCCAAAGTGGTTGAAAATGTGA 732 0.4194 MVVDLSPRSSKRRRITNPYSMDKIAEMHEKFGREIRVFETMSLSASPNDAANKEETEEFYEFTAEDYYKILATKKEDNFLKTRKLRDADLAARRSRITKAVIRVRFPDNHTLEATFHPSETIQSLIDLLKKVIAQPEKPFYLYTTPPKKLVKDISQDFYTVGFCPGAIVYFSYDVSKGDSSDDGPYLPEEVMSLKGLNFSDDKGQSSNPAQSEPVSAEPVVQPPAEERKPAEKKLVKPKWLKM* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0677 243 CDD UBX2_UBXN9 100 173 - -
Mtr6g0677 243 MobiDBLite consensus disorder prediction 199 215 - -
Mtr6g0677 243 Pfam UBX domain 98 165 IPR001012 GO:0005515
Mtr6g0677 243 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 1-RELATED 11 243 - -
Mtr6g0677 243 SUPERFAMILY Ubiquitin-like 76 171 IPR029071 -
Mtr6g0677 243 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 1 11 243 IPR044232 GO:0032984|GO:0051117
Mtr6g0677 243 MobiDBLite consensus disorder prediction 225 243 - -
Mtr6g0677 243 ProSiteProfiles UBX domain profile. 95 171 IPR001012 GO:0005515
Mtr6g0677 243 MobiDBLite consensus disorder prediction 197 243 - -
Mtr6g0677 243 Gene3D - 90 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0677 Mtr-Chr6 8235512 8239875 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0677 30 128 C2H2 Transcription Factor Family AT2G01650 31.068 1.04e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0677 K15627 - gmx:100818386 305.834