Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0634 ATGACTTTTCTTTCATACTTTCTCATTCTTTTTGCTCTTTTAATCCCAAATTTTGTTTCATCCTCTTCAGTTCAAGACCCTGAACTTGTTGTACAAGATGTACAAAGGAGCATCAATGTCTCTAGGTCTAGGAGAAACTTGGGCTATTTATCATGTGGAACTGGCAACCCAATTGATGATTGTTGGAGATGTGACCCAAATTGGGAGAACAACCGACAAAGACTAGCTGATTGTGCAATTGGATTTGGAAAAGATGCAATTGGTGGTAAAAATGGTAAAATCTACATTGTAACTGATTCAGGTGATGATGATGCAGTAAACCCTAAACCAGGAACCCTAAGGTATGGTGCAATTCAAGATGAACCATTATGGATCATATTCAAAAGAGATATGGTAATTCAGTTAAAACAAGAGCTTTTGGTAAATTCATACAAGACAATTGATGGAAGAGGTGCTAGTGTTCACATTGCAAATGGTGGATGTATTACAATACATTATGTTAATAATGTTATAATACATGGTATTCATGTTCATGATTGTGTTCCAACAGGGAATACAAATATAAGGGATTCACCAGAACATAGTGGTTTTTGGACCGTTTCTGATGGTGATGGAATTTCAGTGTTTAATTCACAACATATTTGGATTGATCATTGTTCTTTGTCTAATTGTCGTGATGGTCTTATTGATGTTATACATGGATCTAATGCTATTACTATTTCAAATAACTATATGACTCATCATGACAAAGTTATGCTTTTGGGACATAGTGATTCTTATACACAAGACAAGGACATGCAAGTTACTATTGCTTTTAATCATTTTGGTGAAGGGCTTGTCCAAAGAATGCCAAGATGTAGACATGGCTATTTTCATGTGGTGAACAATGATTACACACATTGGGAAATGTATGCAATTGGAGGGAGTGCTAACCCTACAATCAATAGCCAAGGGAACAGATTTCTTGCACCAGATAATAGATTTAGCAAGGAAGTAACAAAGCATGAAGATGCATCAGAAAGTGAATATAATAGTTGGAATTGGAGATCAGAGGGTGATTTGTTCTTGAATGGAGCATTCTTTAGACAAACTGGTGCTGAATCTTCTTCAATCTATGCTAGGGCTTCAAGTCTTAGTGCAAGACCAGCCTCTCTTGTTGGTTCCATCACTACTACTTCTGGTGTGCTCACTTGCAAGAAGGGAAACCGTTGCTAA 1215 0.3663 MTFLSYFLILFALLIPNFVSSSSVQDPELVVQDVQRSINVSRSRRNLGYLSCGTGNPIDDCWRCDPNWENNRQRLADCAIGFGKDAIGGKNGKIYIVTDSGDDDAVNPKPGTLRYGAIQDEPLWIIFKRDMVIQLKQELLVNSYKTIDGRGASVHIANGGCITIHYVNNVIIHGIHVHDCVPTGNTNIRDSPEHSGFWTVSDGDGISVFNSQHIWIDHCSLSNCRDGLIDVIHGSNAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDNRFSKEVTKHEDASESEYNSWNWRSEGDLFLNGAFFRQTGAESSSIYARASSLSARPASLVGSITTTSGVLTCKKGNRC* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0634 404 PANTHER PECTATE LYASE 6 401 - -
Mtr6g0634 404 SMART amb_all 130 327 IPR002022 -
Mtr6g0634 404 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Mtr6g0634 404 PRINTS Pollen allergen Amb family signature 102 127 IPR018082 -
Mtr6g0634 404 PRINTS Pollen allergen Amb family signature 138 154 IPR018082 -
Mtr6g0634 404 PRINTS Pollen allergen Amb family signature 202 223 IPR018082 -
Mtr6g0634 404 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Mtr6g0634 404 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Mtr6g0634 404 PRINTS Pollen allergen Amb family signature 346 370 IPR018082 -
Mtr6g0634 404 PRINTS Pollen allergen Amb family signature 375 398 IPR018082 -
Mtr6g0634 404 Pfam Pectate lyase 136 321 IPR002022 -
Mtr6g0634 404 Gene3D - 55 397 IPR012334 -
Mtr6g0634 404 SUPERFAMILY Pectin lyase-like 37 396 IPR011050 -
Mtr6g0634 404 PANTHER PECTATE LYASE 18-RELATED 6 401 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0634 Mtr-Chr6 7766525 7770033 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0634 2 404 Polysaccharide Lyase AT5G63180 72.906 0.0 618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0634 K01728 - gmx:100810380 738.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0634 6 7766525 7770033 Mtr6g0634 6 7766525 7770033 ECH