Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0614 ATGGGTCGTGGAAGAATATCTATGGAACTCATTCAAAAGGAGAAATCAAGAAAGACAACATTTCAGAAGAGAAAGAATGGATTAATGAAAAAAGTGAATGAATTTTCCATTCTTTGTGATGTTGATGTTTGTGTAATTCTCTATGCTCCTAACTTTGAAGCCCAAGGATTCGTTGAACCTGAAACATGGCCTAAAGACAAAAGAGAGGTGCAAAGAATCCTTCAAAAGTACTATAATACAACAAGTGACAGGCGTCCTAAGATCTATGATGTTCAAGAGTATTTTAAGGAAAGGATGAAAAAAATTAAATTTGAGATTTCCAAAGTGCGCAAAGAGAAGATAAAGATGATGTATCCATCCTGGGATGAATCTTACAATTCACTTGGAGTGGAACAAGTGAGGTCATTTGCTAGCATGTTGGATTCCAAGCTTGATGCTTGTAATCAAAGGATGCATATGCTAAAAGGAGATCTTAAAGGAAAAACAATAGCTCATGAATCACACAAGGTTGATATACTTATAGGTAACCCTAACTTAGCCTCAAAGCCAAGTAGCTACTTCAATCTCATGCAAAACAACATGTTTGAAGCAAAAATTCATCCTCCATTGATGAATATTAATGATAAAACCCCATTAGGGTTTTGGCAACTTCAACTCGGACAAAGCTCTCAACCTTCTTCTATGATTTCCAATGCGCAAAGCTCATACTACGTGGAGTCTCAAGAAGGTAGGTACCCACAATCTTACCCTTGCAAGCAAATTGATGTTAATTGGGCTAACTGGGCCAATCGAGTTGATACTAATGTTACATGCGATCTGAAAATCGATATGAAAAGGAAGGATGTAGCTGAAAATGATGAAAACTTATCACCATACTATTACAATGGAAATGCATCGACGATGCAATCATATCCTTTTGCTATGCATTCTCTTCCTTTCCAGAATCTTTCATACCTACCACATGGATTTCAACTTAATGGATTCAATGATATAAATATGCTTCAAGCTCATAAGTTCAACTACATGGATGGAAGGAAGTAG 1041 0.3641 MGRGRISMELIQKEKSRKTTFQKRKNGLMKKVNEFSILCDVDVCVILYAPNFEAQGFVEPETWPKDKREVQRILQKYYNTTSDRRPKIYDVQEYFKERMKKIKFEISKVRKEKIKMMYPSWDESYNSLGVEQVRSFASMLDSKLDACNQRMHMLKGDLKGKTIAHESHKVDILIGNPNLASKPSSYFNLMQNNMFEAKIHPPLMNINDKTPLGFWQLQLGQSSQPSSMISNAQSSYYVESQEGRYPQSYPCKQIDVNWANWANRVDTNVTCDLKIDMKRKDVAENDENLSPYYYNGNASTMQSYPFAMHSLPFQNLSYLPHGFQLNGFNDINMLQAHKFNYMDGRK* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0614 346 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Mtr6g0614 346 PANTHER MADS BOX PROTEIN 3 250 - -
Mtr6g0614 346 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 3 250 - -
Mtr6g0614 346 CDD MADS 2 51 - -
Mtr6g0614 346 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr6g0614 346 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr6g0614 346 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr6g0614 346 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Mtr6g0614 346 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr6g0614 346 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Mtr6g0614 346 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0614 Mtr-Chr6 7501955 7502995 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0614 1 150 Type I MADS-box Gene Family AT5G55690 38.411 1.05e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr6g0614 SRF-TF 3.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0614 - - mtr:MTR_1g114730 511.916