Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0550 ATGGATCGGGTGGTTGCAACAGTGAGTGGTTACCGTGAACTCGAGCGATTCAATCTTATTAAGCTCATTTCGCGTTCCGGTGCCAGTTACGTTGGAGATATGTCGAAGTCAATTACGCATCTGGTGTGTTGGAAGTTTGAAGGAAAGAAGTATGACATTGCCCGTAAGTTAAAAATATATGTAGTCAACCACCGTTGGGTTGAAGACTGTATAAAGGAAGGAAGGCGTGTCCCAGAAGATTCTTATACCTTGCAAAGTGGACAAGAAGTAGGGCCATTAGTAATGGAAGTTCCAGTCAATGTTCAAGCAAGTACCTTATCCAAGAATAAAGTGGTCAGAGGCAGATCATGTGATATTGTGTCTGAAAGGCAAAATACTGACTTCAGTTCTGGGGTCTGTGGAATTCCTGTTTTGGAAGATTCTTCTTTACTCAAACAGCATGGGGAGTCAAGTTCATATCCACCTAGACTGTCAAGGAAAGGTAAAAGAAATAGAGGAAATGATGTTAGTACCACGGGTAGACATTCTCATAAAGGAAGAAGGGTTGTGAAAAATGATGGTGAAGTGACGTTTGCTCCTATAATTTTGGATTTAAGCACAGATGACCAGCTTTGCGAAATAGATAGGCAAGACACTGAAGCTGCAGTTACATCTACCCTTTCTCGCCATGTCAATATTGACAATATTCAAGAAAATAGTGAAGGACTTGATGCTGGACTATCTAGTCAAAGTAGAACTATTGGTGGAAGTTCAGATGGCATTGAGCAGAGCAGAGATTCAAATCATATATCTACTCTCAGAAATTCAACTTTGTTTATAGAAGATCCTCTTCCTCTGACACAAACATCAGTGGATTTATGTTCCAGTGCTGCTGAAAAGTTCTCCGACGGTGATGTGGTTGATAATTTTGATGACTCCCCTACTTCAAATGAGTTGTCATGTGTTATATGCTGGACAGATTTCAGTTCAACAAGGGGGATTTTGGAGTGTGGACATCGGTTTTGTTTTTCATGCATCCAGGGTTGGGTTGATTGCAGAAAAGCAATGGGGAAAGTTTCAAACTGTCCTTTGTGCAAGGCAAGTATTATGAAGATCATGAAAGTTGAGCATGCAGACACCACCGATCAAAAAGCATACTCCCAGACAATTCCATGTGATTACACTAGCTCAGATGTTTTTATCCCAATTGATCAAGAATTTCCAGACAACAGCTTAGAGGCAGGTGCTTGTGTAATTTGTGGTGGTCGAGAACCTGAAGATCTACTAGAGAATTGTGATGTTTGTCGATGTCGAAGAATTCATTCCTATTGCATGGACCCTCCATTACGACCATGGACATGCACTTCCTGCAAGGAACTTCGAATGCTTTATCGTAACCGCTTATATTAG 1389 0.4104 MDRVVATVSGYRELERFNLIKLISRSGASYVGDMSKSITHLVCWKFEGKKYDIARKLKIYVVNHRWVEDCIKEGRRVPEDSYTLQSGQEVGPLVMEVPVNVQASTLSKNKVVRGRSCDIVSERQNTDFSSGVCGIPVLEDSSLLKQHGESSSYPPRLSRKGKRNRGNDVSTTGRHSHKGRRVVKNDGEVTFAPIILDLSTDDQLCEIDRQDTEAAVTSTLSRHVNIDNIQENSEGLDAGLSSQSRTIGGSSDGIEQSRDSNHISTLRNSTLFIEDPLPLTQTSVDLCSSAAEKFSDGDVVDNFDDSPTSNELSCVICWTDFSSTRGILECGHRFCFSCIQGWVDCRKAMGKVSNCPLCKASIMKIMKVEHADTTDQKAYSQTIPCDYTSSDVFIPIDQEFPDNSLEAGACVICGGREPEDLLENCDVCRCRRIHSYCMDPPLRPWTCTSCKELRMLYRNRLY* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0550 462 SMART ring_2 314 358 IPR001841 -
Mtr6g0550 462 SUPERFAMILY BRCT domain 2 85 IPR036420 -
Mtr6g0550 462 MobiDBLite consensus disorder prediction 161 183 - -
Mtr6g0550 462 ProSiteProfiles Zinc finger RING-type profile. 314 359 IPR001841 -
Mtr6g0550 462 Pfam twin BRCT domain 4 66 IPR001357 -
Mtr6g0550 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 460 IPR013083 -
Mtr6g0550 462 MobiDBLite consensus disorder prediction 236 260 - -
Mtr6g0550 462 ProSitePatterns Zinc finger RING-type signature. 330 339 IPR017907 -
Mtr6g0550 462 ProSiteProfiles BRCT domain profile. 1 84 IPR001357 -
Mtr6g0550 462 SUPERFAMILY FYVE/PHD zinc finger 403 453 IPR011011 -
Mtr6g0550 462 PANTHER F5A8.9 PROTEIN 1 460 - -
Mtr6g0550 462 MobiDBLite consensus disorder prediction 145 183 - -
Mtr6g0550 462 SUPERFAMILY RING/U-box 307 367 - -
Mtr6g0550 462 Gene3D BRCT domain 1 89 IPR036420 -
Mtr6g0550 462 Pfam Ring finger domain 313 359 IPR001841 -
Mtr6g0550 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 384 IPR013083 -
Mtr6g0550 462 SMART BRCT_7 1 74 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0550 Mtr-Chr6 6577941 6582957 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0550 38 90 Core DNA Replication Machinery Family AT4G02110 51.852 1.95e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0550 - - cam:101495587 658.677