Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0475 ATGGTTCGTCAAACTAATTTAGTTATCATTGGTGTCACCGTTGGTCTGACCCTTGGAATTCTGATTTCTTGCCTCCTATTTTTCGGCATAAGGTGGTGCAGGAAACGTTCTCATCTTTCACGATCTGCGAGTGAGCCTAGTTTGACAACTCTCCCGATACGAACAAATGGACCTGGAACAAGTATCGATTTTAGTGCATCTATCACTAGTTCCATTGGCACATCAAGGTCAGATAATCCACAGAAAAATTCCCATTTCACTTGGTGGAATAATCAAAACAAAGACCGGTTTGCTTCAGCGTCAGGCATTCTAAAGTATTCGTACAAAGAACTTCAAAAGGCCACACAAAATTTCACGACTACCTTGGGACAAGGATCATTTGGCACGGTTTATAAAGCCACAATATCTACAGGAGAGGTGGTAGCTGTGAAGGTGCTAGCAAACAATTCTAAACAAGGGGAGAGAGAATTCCAAACAGAGGTGTCTCTGCTAGGAAGACTGCATCACCGGAATCTTGTAAATTTGCTTGGATATTGTGTAGATAAAGGACAGCGCATACTGGTTTATCAGTTCATGAGCAATGGAAGTTTAGCAAGTATTCTATATGATGAAGAAAAGAAGTTAAGTTGGGATGACAGGCTACAGATTGCCGTTGATATTTCACATGGAATAGAGTATCTTCATGAAGGAGCAGTCCCTCCCGTCATACATCGTGATTTGAAGTCTCCCAATATATTGCTAGATGGCTCTATGAGAGCTAAGGTTGCTGATTTTGGTCTCTCAAAGGAAGAGAGATTTGATGGCCGAAATTCTGGTCTTAAAGGTACATATGGTTACATGGACCCGGCATATATTTCCTCAAGCAAGTTAACAACCAAGAGTGACATATACAGTTTTGGTGTCATACTTTTTGAGCTCATCACTGCCATCCACCCTCATCAAAATTTGATGGAATATGTTAATCTTGCTGCTATGGAACATGATGGAATAGATGAGATACTTGACAAGCAACTTGTTGGAAAATGCAATGTTTTAGAAGTAAGGCAACTTGCTAAAATTGCACACAAATGCTTACACAAATCACCTAAGAGAAGACCTTCAATAGGTGAAGTTTCACAAGGTATATCAAGGATAAAGCAAAGGAGATTGCAAAATGTGATGGAAGATAACTTGTCATTTGCAAATAGCAATAACTTTTCAAGAGCCGCGGGTCGATTAGAAGATCGACAAGTTGAATTAAGTAGGATAGTTACCATGACCATCAAAGAAACTGTATGA 1278 0.3983 MVRQTNLVIIGVTVGLTLGILISCLLFFGIRWCRKRSHLSRSASEPSLTTLPIRTNGPGTSIDFSASITSSIGTSRSDNPQKNSHFTWWNNQNKDRFASASGILKYSYKELQKATQNFTTTLGQGSFGTVYKATISTGEVVAVKVLANNSKQGEREFQTEVSLLGRLHHRNLVNLLGYCVDKGQRILVYQFMSNGSLASILYDEEKKLSWDDRLQIAVDISHGIEYLHEGAVPPVIHRDLKSPNILLDGSMRAKVADFGLSKEERFDGRNSGLKGTYGYMDPAYISSSKLTTKSDIYSFGVILFELITAIHPHQNLMEYVNLAAMEHDGIDEILDKQLVGKCNVLEVRQLAKIAHKCLHKSPKRRPSIGEVSQGISRIKQRRLQNVMEDNLSFANSNNFSRAAGRLEDRQVELSRIVTMTIKETV* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0475 425 SMART serkin_6 116 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g0475 425 CDD STKc_IRAK 122 378 - -
Mtr6g0475 425 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Mtr6g0475 425 SUPERFAMILY Protein kinase-like (PK-like) 88 372 IPR011009 -
Mtr6g0475 425 Pfam Protein tyrosine and serine/threonine kinase 118 372 IPR001245 GO:0004672|GO:0006468
Mtr6g0475 425 PANTHER OS01G0750732 PROTEIN 9 419 - -
Mtr6g0475 425 ProSiteProfiles Protein kinase domain profile. 116 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g0475 425 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 2 9 419 - -
Mtr6g0475 425 Gene3D Transferase(Phosphotransferase) domain 1 192 401 - -
Mtr6g0475 425 Gene3D Phosphorylase Kinase; domain 1 81 191 - -
Mtr6g0475 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Mtr6g0475 425 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0475 Mtr-Chr6 5666706 5672720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0475 102 371 Receptor kinase-like Gene Family AT3G19300 44.643 1.17e-71 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Mtr6g0475 PK_Tyr_Ser-Thr 7e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0475 - - gmx:100819995 711.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0475 6 5666706 5672720 Mtr6g0475 6 5666706 5672720 ECH