Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0468 ATGGGAAGAGGAAGAGTGGAATTGAAAAGGATAGAGAATAAGATAAACAGACAAGTAACATTTGCAAAGAGAAGAAATGGACTTCTTAAGAAAGCTTATGAATTATCTGTTCTTTGTGATGCTGAAGTTGCTCTTATTATCTTCTCCAATAGAGGCAAGCTTTATGAGTTTTGTAGCAGTCCTAGCATGCTCAAGACGCTTGATAGGTACCAAAAATGCAGCTATGGTGCAGTAGAAGTTAACAAACCTGCCAAAGAGCTTGAGCAGAGCAGTTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAAGGACTCAAAGAAACCTTCTTGGTGAAGACTTAGGTCCATTAGGTACCAAAGATCTTGAGCAGCTTGAACGCCAACTTGATTCATCTCTCAAGCAAGTCAGGTCCACCAAGACCCAATTCATGCTGGACCAATTAGCTGATCTTCAAAATAAGGAGCATATGTTGGTAGAAGCAAACAGATCTTTGTCTATGAAGCTGGAAGAAATCAATATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGTGATCAAAGTATGGCATATGGTAATCAAAATGCTCACTCACAAAGCTTCTTTCAGCCTTTGGAGTGCAATCCAACATTGCAGATAGGGACTGATTACAGGTACAGTCCTCCAGTAGCATCAGATCAGCTAACTGCAACAACTCAAGCTCAACAAGTTAATGGATTTATTCCTGGATGGATGCTTTGA 756 0.4008 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSMLKTLDRYQKCSYGAVEVNKPAKELEQSSYREYLKLKARFESLQRTQRNLLGEDLGPLGTKDLEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEHMLVEANRSLSMKLEEININSRNQYRQTWEAGDQSMAYGNQNAHSQSFFQPLECNPTLQIGTDYRYSPPVASDQLTATTQAQQVNGFIPGWML* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0468 251 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr6g0468 251 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mtr6g0468 251 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Mtr6g0468 251 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr6g0468 251 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr6g0468 251 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr6g0468 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mtr6g0468 251 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr6g0468 251 PANTHER MADS BOX PROTEIN 1 238 - -
Mtr6g0468 251 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Mtr6g0468 251 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Mtr6g0468 251 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 238 - -
Mtr6g0468 251 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr6g0468 251 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mtr6g0468 251 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0468 Mtr-Chr6 5591524 5596953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0468 1 251 MADS-box Gene Family AT5G15800 72.727 2.24e-124 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mtr6g0468 K-box 2.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0468 K09264 - gmx:100785322 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0468 6 5591524 5596953 Mtr4g3995 4 53729854 53735560 ECH
Mtr6g0468 6 5591524 5596953 Mtr6g0468 6 5591524 5596953 ECH
Mtr6g0468 6 5591524 5596953 Mtr7g0345 7 5478627 5484295 PCT