LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr6g0443	ATGTCTTCCACCAATAATTTTCGACAATCTGCGAAAGCAATTTCTAATTGGAGAAAAGTTAGAATAGTATTTAGTGCACTTGCTCGCTTCAAATACTATGCATCTCTTCGAAACGACACATGGATGCATGATGTGTTCCTAAGTTTTAGTGGAAAGGAGACGCGTGCATCTTTCACTTCGCATCTCTATGCTTCTCTTCAAAACGCCGGATTTCGTGTTTTCAGGGACGACGATTCGCTTCAAAGAGGAGATCACATTTCAACATCACTCTTGCGAGCAATTGAACAGACTCGAATTTCTATCATCGTTTTTTCAAAAAATTACGCCCAATCGCGATGGTGTCTTGATGAGTTGTTGAGGATAATGGAGTGTCAGAAAACCATTGGACAAATTGTTCTTCCAGTGTTCTTCAATGTAGATCCATCGGAAGTCCGTCATCAAACCGGTGAATTCGGAAAAGCATTTCAAATTCTTTTGAATAGGAGGATAGAGAAGGAAGAACCTGAGTTGATAGAATTCAACTTGGAGATGAAGTTGAGAACAGCGCTTCGTCAGGCAGCTGGCCTTGCTGGGTTCGTTGTCCCAAACTCCAGGAATGAAAGTAAGGCTATCCAGGATATTGTTGAAAATGTTACGCGTAAGCTTGACAAGACAGAATTGTTTATTGCTGATAATCCAGTGGGAGTTGAATCTCGAGTGCAAGGTATGATTCAACTAATGGAGCAAGATATCCAACAATCAAATGATGTTCTTCTACTGGGGATGTGGGGTATGGGGGGAGTTGGTAAAACAACCATTGCCAAAGCTATTTACAATAAAATTGGCCGCAATTTTGAAGGTAGAAGCTTCCTTGCAAATATTAGGGAAGTTTGGGAGGAAAATGCTGGAAAAGTGAATTTACAAGAACAACTTCTCTTTGATATCTGCAAAGATATGGCAACCAAAATTCAAAGCATTGAATGCGGAAAAATCATATTAAAGGATAGACTCTGCCATAAAAGAGTATTAATATTACTCGATGACGTTAATACATTGGACCAACTAAATGCTTTGTGTGGAAGTCGTAAGTGGTTTGGTTCGGGAAGCAGAATAATCATCACCACAAGAGACAGACATATACTTAGTGGGAATAGGGTTAATAAAGTATTCAAAATGAAACACATGGATGAAAGTGAATCAATTGAGCTATTCAGTTGGCATGCATTTAAGCAAGCGAGTCCTGCGAAAGATTTTGCTAAAATTTCTAGAAATGTAGTGGAGTATTCTGGGGGATTGCCACTAGCTTTGGAAGTTATTGGGTCATATTTGTTTGACAGAGGGATAACAGAATGGAAAAGTGCATTGGACAAACTCAAAAGAATTCCTAATAATCAAGTACAGAAGAAGTTAAGAATAAGCTATGATGCTTTAAATGATGATTATGAGAAAGAAATATTCCTTGATGTAGCTTGTTTCTTTATTGGGAAGGACCGAAATGATGTTACACTTATATTAGATGGATGTGGACTTTTTGCTGAAATTGGAATAAGTATCCTTGTTGAGCGAAGTCTTGTCACTGTTGATGATAAGAACAAACTTGGAATGCATGATTTGTTGCGAGATATGGGAAGAGAAATCATTCGTGGGAAATCACCAGAAGAGCTCGAGGAGCGTTGCAGGTTGTGGTTTCATGAGGATGTGCTTCATGTATTATCAGATCAAACTGGAACAAAAGCTATTAAGGGGCTGGCGTTGAAGTTGCCAAGAGCTAATGAAAAACGTTTTAGCACTAAAGCATTCAAGAAGATGAACAAACTCAGATTGCTCCAACTTGCTGGGGTAAAACTTGATGGAGATTTTGAATATCTTTCCAGAAATCTGAGATGGCTGTCTTGGAATGGATTTTGTTTAGCACATATACCAACAAATTTGTGTAGAGAAAATTTAGTTTCCATCGAGTTAGAGAATAGCCATGTCAAACTATTATGGAAAGAGGCCCAGATGATGGAAAAGCTAAAAATTCTAAATCTTAGTCATTCTCATTGTCTGACGCACACCCCAGACTTTTCATACTTGCCTAAGCTTGAAAAGTTAGTACTCAAAGATTGTTCAATGCTGTCTGAGGTTTCTCCTAGCATTGGGAATCTCGGCGAAATTCTTCTAATAGATTTTGAAGATTGTGTTAGCCTTCGTAACCTTCCAAGAAGCATTTATAAGTTGAAATCTCTAAAGACTCTTATTCTTTCAGGGTGTGTAATGATTGAGAAGTTGGAAGAGGATATAGAACAGATGGAATCATTAACCACTCTGCTTGCAAATAACACTGCAATAAAAAGGGTACCCTTTTCAGTAGTACGGTCAAAAAGCATTGGATACATTTCATTGTGTGGCCATGTAGGATTTTCACATGATGTTTTTCCATCTATCATTTGGTCTTGGATGTCACCAACAAATTATCTCCCACCCCTATTTCAAACATGTAATATGATGTCATCTCTTGTTCCTTTAGATGTACCACATAGTAGTTCCCATGAACTATCATCAATTTTCAAGTACCTTCCAATTCTTCGAAGTCTTTGGGTGGAATGTAGCTCGGAACTTCAACTTTCTCATGATGCAGCAACAATTTTGGATGTCTTATATGCGATAGATTATAAGGAGATGGAACCAACTGCAATTACATCACAAGTATCAAATAAGACTACTTCTACATCACAAGTATCAAAACATTCCTCAACGTCTCTTTTAATTCAAATTGGAATGAATTGCCGAATAACTAATATTCTGAAAGAGATAATTTTACAGCAGAATATGGATGGCAACGGGAGTGGTGGTTGTTTCCTCCCCAATGATAGTTATCCAAATTGGTTAACCTATAGTTCTGAAGGTTCTTCTGTGAAATTTGAAGTTCCTCAAGTGGAAGGGCGTAACTTGAAGACAATTATGTGCAATGTCTGTACTTCAACTCCGGATAATGTAACATCTAGTGGCCTTAAAAACATGTTATTGAAAAATTACACAAAGGCCACCATTCAGCTTTATAAGAGTGAAGCATTAGTCTCCTTTGAAGATGAAGAGGGGCAGAGGGTAGTATCAAGTCTAGAACCTGGTAACAAAGTGGAGATCCATTTTGTTCTCGAGAATGATTTCATTGTGAAGAAGACAACAATTTATCTCGTATACGATGAACCAGTTTCCAAAACAATGGAGTTGTATCATGTCAAGAGATTCTCTACTGATGAGGAGTGTTGA	3231	0.3788	MSSTNNFRQSAKAISNWRKVRIVFSALARFKYYASLRNDTWMHDVFLSFSGKETRASFTSHLYASLQNAGFRVFRDDDSLQRGDHISTSLLRAIEQTRISIIVFSKNYAQSRWCLDELLRIMECQKTIGQIVLPVFFNVDPSEVRHQTGEFGKAFQILLNRRIEKEEPELIEFNLEMKLRTALRQAAGLAGFVVPNSRNESKAIQDIVENVTRKLDKTELFIADNPVGVESRVQGMIQLMEQDIQQSNDVLLLGMWGMGGVGKTTIAKAIYNKIGRNFEGRSFLANIREVWEENAGKVNLQEQLLFDICKDMATKIQSIECGKIILKDRLCHKRVLILLDDVNTLDQLNALCGSRKWFGSGSRIIITTRDRHILSGNRVNKVFKMKHMDESESIELFSWHAFKQASPAKDFAKISRNVVEYSGGLPLALEVIGSYLFDRGITEWKSALDKLKRIPNNQVQKKLRISYDALNDDYEKEIFLDVACFFIGKDRNDVTLILDGCGLFAEIGISILVERSLVTVDDKNKLGMHDLLRDMGREIIRGKSPEELEERCRLWFHEDVLHVLSDQTGTKAIKGLALKLPRANEKRFSTKAFKKMNKLRLLQLAGVKLDGDFEYLSRNLRWLSWNGFCLAHIPTNLCRENLVSIELENSHVKLLWKEAQMMEKLKILNLSHSHCLTHTPDFSYLPKLEKLVLKDCSMLSEVSPSIGNLGEILLIDFEDCVSLRNLPRSIYKLKSLKTLILSGCVMIEKLEEDIEQMESLTTLLANNTAIKRVPFSVVRSKSIGYISLCGHVGFSHDVFPSIIWSWMSPTNYLPPLFQTCNMMSSLVPLDVPHSSSHELSSIFKYLPILRSLWVECSSELQLSHDAATILDVLYAIDYKEMEPTAITSQVSNKTTSTSQVSKHSSTSLLIQIGMNCRITNILKEIILQQNMDGNGSGGCFLPNDSYPNWLTYSSEGSSVKFEVPQVEGRNLKTIMCNVCTSTPDNVTSSGLKNMLLKNYTKATIQLYKSEALVSFEDEEGQRVVSSLEPGNKVEIHFVLENDFIVKKTTIYLVYDEPVSKTMELYHVKRFSTDEEC*	1077

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr6g0443	1076	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	214	481	IPR027417	-
	Mtr6g0443	1076	SUPERFAMILY	L domain-like	528	856	-	-
	Mtr6g0443	1076	SMART	till_3	42	189	IPR000157	GO:0007165
	Mtr6g0443	1076	Gene3D	-	39	212	IPR035897	-
	Mtr6g0443	1076	Pfam	TIR domain	43	218	IPR000157	GO:0007165
	Mtr6g0443	1076	Gene3D	-	213	382	IPR027417	-
	Mtr6g0443	1076	Gene3D	-	387	471	IPR042197	-
	Mtr6g0443	1076	PRINTS	Disease resistance protein signature	252	267	-	-
	Mtr6g0443	1076	PRINTS	Disease resistance protein signature	329	343	-	-
	Mtr6g0443	1076	PRINTS	Disease resistance protein signature	422	436	-	-
	Mtr6g0443	1076	PRINTS	Disease resistance protein signature	731	747	-	-
	Mtr6g0443	1076	Coils	Coil	747	767	-	-
	Mtr6g0443	1076	Pfam	NB-ARC domain	245	469	IPR002182	GO:0043531
	Mtr6g0443	1076	PANTHER	RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED	49	1054	-	-
	Mtr6g0443	1076	Gene3D	Ribonuclease Inhibitor	583	902	IPR032675	-
	Mtr6g0443	1076	ProSiteProfiles	TIR domain profile.	41	215	IPR000157	GO:0007165
	Mtr6g0443	1076	SMART	AAA_5	249	389	IPR003593	-
	Mtr6g0443	1076	SUPERFAMILY	Toll/Interleukin receptor TIR domain	34	191	IPR035897	-
	Mtr6g0443	1076	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	49	1054	IPR044974	GO:0006952

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr6g0443	Mtr-Chr6	5322293	5328908	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr6g0443	17	852	WRKY Transcription Factor Family	AT4G12020	28.653	7.42e-81	288

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr6g0443	-		-	mtr:MTR_6g015695	2125.13