LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr6g0442	ATGGTTTCTTCCGGTGACTCCTCCCAACATGCCCAATTAATTTTGGGTGATGAAGATTCAAGAAAAACCGGCACAAGGATCCATGATGTGTTCTTGAGTTTCAGAGGAGAGGACACTCATGCTTGCTTCACTTCACATCTCTATGCTTCCCTTCAAAATCTCGGAATCAACGTTTTTAAGGATGATCATTCACTTCAAAGGGGAGATCACATTTCAAAATCACTAATGCAAGCAATTCAAGATTCTCAAATTTCTGTTATCGTTTTCTCAACAAATTATGCAGAATCGCAATGGTGTCTTGAAGAGTTGGTGGAGATAATGAAGTGTCGCAGAATTCAAGGCCAAGTTGTTTTGCCAGTGTTCTACGGTGTAGATCCATCTGAAGTACGTAATCAAACTGGTGAGTTCGGAAAAGCATTTCAAAGTCTATTGAAAAGGATTTCAAAAAAGGAGGAGGAAGATGATGAGTCCTTAGATTTGAAATTGGGGTTAGGTTCTGTAAACTCGCTTCGTGAATATCCAGAGCTTCGTGAGGCTGCTAACCTTGCTGGGGTTGTAGTCCTAAATGCCAGGAATGAAAGTGAAGCTATCAAGGATATTGTTAAAAATATTACACGTTTGCTTGACAAGACAGACTTATTTGTTGCTAATAATCCGGTGGGAGTTGAATCTCGTGTGCAAGATATGATTAAGCTGCTAGAACAAGATATCCAACAATCAAATGATGTTTTCCTTCTAGGGATGTGGGGTATGGGAGGAGTTGGCAAAACAACCATCGGAAAAGCTATTTACAATAAAATTGGCCGCGATTTTGATGGTAGAAGCTTCCTTGCAAATATTAGGGAAGTTTGGGAGGAAAAAGCTGGCCAAGTGAATTTACAAGAACAACTTCTCTCTGATATCTGCAAAGACACGACAACCAAAATACAAAGCATTGAAAATGGAAAAATCATATTAAAGGATAGACTTTGTCATAAAAGAGTACTAATTGTACTTGATGATGTTAATACTTTGGACCAACTGAATGTTTTGTGTGGCAGTCATCATTGGTTTGGTTTGGGGAGTAGAATAATTATCACAACAAGAGATAGATATATACTTCGTGGGAGTAGAGTTAACCTAATATATGAAATGAAGCATATGGATGACAGTGAATCAATTGAGCTATTTAGTTGGCATGCATTCAAGCAAGCAAGTCCTACAAAAGATTTAGCTGGAATTTCCAGAAATGTAGTTGAGTATTCTGGAGGATTACCGCTGGCTCTAGAAGTCCTTGGGTCGTATTTGTTCGACAGGGAGGTAGCGGAGTGGTACAGTGCCTTGGAGAAACTCAAAAGAATTCCTAACAACCAAGTACAAAAGAAACTAAAAATAAGCTATGATGGTTTAAATGATGATGCCGAGAAAGAAATATTTCTTGACATAGCTTGTTTCTTTATTGGGATCGACCGAAATGATGCTACACTAATATTAAATGGATGTGGACTTTATGCTGAAATTGGAATAAGTATTCTTGTTGAGCGAAGCCTTGTAACTGTTGATGATAAGAATAGGCTTAGAATGCATGATTTGCTACGAGATATGGGAAGAGAAGTCGTTCGTGAGAAATCACCGGAGGACCCTGAGGCACGTAGCAGATTGTGGCTTCATGATGATGTGCTTGATGTTTTATCAGATCAATCTGGAACTAAAGCTATAAAGGGATTGGCTTTGAAGTTGCCAAGAGTTGATGCAAAATGTTTTAGTACTAAAGCATTTAAGAAGATGAAGAGACTGAAATTGCTTCTACTTGCTGGAGTAAAACTTGATGGAAATTTTGAATGTCTTTCAAGAAATCTGAGGTGGCTGTCTTGGAATGAATTTCCTTTAACACATATACCAACAAACCTTTTTCTAGGAAATTTAGTTTCCATAGAGTTAGAGAATAGCAATGTCAAACTTATGTGGAAAGAGGCCCAGAGAATGGAGCATCTGAAAATTCTCAATCTTAGTCATTCACATTGTCTGACACATACCCCTGACTTTTCTTACATGCCTAATCTTGAAAAGCTTGTACTCAAAGATTGTCCAATGTTATCTGAAGTTTCTCCAAGCATTGGACATCTCAATAAAATTCTTCTGATAAATTTCAAAGACTGCATTAACCTTTCTAGCCTCCCAAGAAGCATCTACAAGTTGAAATCTTTGAAAACTCTCATTCTTTCTGGTTGTAAAAAGTTAGACAAGTTGGAAGAGGACTTGGAACAATTGGAATCTTTAACCACCCTGCTTGCAAATGACACTGCAATAACAAGAGTACCCTTCTCAATAGTTAGTTCCAAAAGCATTGGATATATTTCTTTATGTGGCTATGAAGGATTCTCACGTGATGTGTTTCCATCTATCATTTGGTCTTGGATGTCACCAACAAATAATCTCCGATCTCCATTTCAAACATCTGCTGCCATGTCATCTCTTGTTTCTTTTGATGTACCGAGCAGTAGTTTCAATGAGTTATCATCTTTTTCTGACCACCTTCCAAGACTTCGAAGTCTTCGGGTGGATTGCAATTCCGTAGATCAACTTTCTCTAGATGCAAAAACAATTTTGAATGCCCTATATGCCACTGTTTCTAAGGAATTTGAATCAACTGCAACTACATCACATGCACCTGATATGAAGACTTTTACATTAATTCAACGATGCAGTGAAGTGCATGTTTCAGGATCACAACATTCCTTCAAGTCTCTTTTAATTCAAATGGGAATGAATTGCCAAGTCACTAATATTCTGAAAGAGAAAATTTTGCAGAATATGGATGTTAATGGAAGTGGTGGTTGTTTCCTCCCTGGTGATAGTTATCCAAATTGGTTAACCTTCTACTCTGAAGGTTCTTCTGTAACTTTTCATGTCCCTCTGGTGGAAGGGCGTAACTTGAAGACAATGATGTGCATTATCTATACGTCAACCCAAAATAACATAACTTCATATGGCCTTAAAAATGTGTTGCTAAAAAATTACACAAAGGCTACCATTCAGCTTTATAAGAGAGAGGCATTAATTTCCTTTGAAGATGAGGAGGGGCAGAGAGTAGTATCAAGTATGGATCCTGGTGACAAAGTAGAGGTGGTTATTGTTTTCGAGAATTGTTTCATCGTGAAGAAGACAACAATTTATCTGGTATATGATAAACCAATTGGAAAGACTTTGGATTTATATCATTTACCAGATTTGAATGTCCTTGCTTCTAGTGATGATGAAAATGAGCACCCTGTCAAGAGATTCTCTATTGAAGAGGAGCACACTGAAGATGTCAATCAGAACAGAAAGAAGAAAAATCGAATGGAATGA	3330	0.3763	MVSSGDSSQHAQLILGDEDSRKTGTRIHDVFLSFRGEDTHACFTSHLYASLQNLGINVFKDDHSLQRGDHISKSLMQAIQDSQISVIVFSTNYAESQWCLEELVEIMKCRRIQGQVVLPVFYGVDPSEVRNQTGEFGKAFQSLLKRISKKEEEDDESLDLKLGLGSVNSLREYPELREAANLAGVVVLNARNESEAIKDIVKNITRLLDKTDLFVANNPVGVESRVQDMIKLLEQDIQQSNDVFLLGMWGMGGVGKTTIGKAIYNKIGRDFDGRSFLANIREVWEEKAGQVNLQEQLLSDICKDTTTKIQSIENGKIILKDRLCHKRVLIVLDDVNTLDQLNVLCGSHHWFGLGSRIIITTRDRYILRGSRVNLIYEMKHMDDSESIELFSWHAFKQASPTKDLAGISRNVVEYSGGLPLALEVLGSYLFDREVAEWYSALEKLKRIPNNQVQKKLKISYDGLNDDAEKEIFLDIACFFIGIDRNDATLILNGCGLYAEIGISILVERSLVTVDDKNRLRMHDLLRDMGREVVREKSPEDPEARSRLWLHDDVLDVLSDQSGTKAIKGLALKLPRVDAKCFSTKAFKKMKRLKLLLLAGVKLDGNFECLSRNLRWLSWNEFPLTHIPTNLFLGNLVSIELENSNVKLMWKEAQRMEHLKILNLSHSHCLTHTPDFSYMPNLEKLVLKDCPMLSEVSPSIGHLNKILLINFKDCINLSSLPRSIYKLKSLKTLILSGCKKLDKLEEDLEQLESLTTLLANDTAITRVPFSIVSSKSIGYISLCGYEGFSRDVFPSIIWSWMSPTNNLRSPFQTSAAMSSLVSFDVPSSSFNELSSFSDHLPRLRSLRVDCNSVDQLSLDAKTILNALYATVSKEFESTATTSHAPDMKTFTLIQRCSEVHVSGSQHSFKSLLIQMGMNCQVTNILKEKILQNMDVNGSGGCFLPGDSYPNWLTFYSEGSSVTFHVPLVEGRNLKTMMCIIYTSTQNNITSYGLKNVLLKNYTKATIQLYKREALISFEDEEGQRVVSSMDPGDKVEVVIVFENCFIVKKTTIYLVYDKPIGKTLDLYHLPDLNVLASSDDENEHPVKRFSIEEEHTEDVNQNRKKKNRME*	1110

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr6g0442	1109	SUPERFAMILY	Toll/Interleukin receptor TIR domain	19	143	IPR035897	-
	Mtr6g0442	1109	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	210	475	IPR027417	-
	Mtr6g0442	1109	Pfam	NB-ARC domain	228	460	IPR002182	GO:0043531
	Mtr6g0442	1109	PANTHER	RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED	35	1055	-	-
	Mtr6g0442	1109	ProSiteProfiles	TIR domain profile.	26	208	IPR000157	GO:0007165
	Mtr6g0442	1109	SMART	till_3	27	170	IPR000157	GO:0007165
	Mtr6g0442	1109	Pfam	TIR domain	28	204	IPR000157	GO:0007165
	Mtr6g0442	1109	MobiDBLite	consensus disorder prediction	1080	1109	-	-
	Mtr6g0442	1109	Gene3D	-	23	214	IPR035897	-
	Mtr6g0442	1109	Coils	Coil	733	760	-	-
	Mtr6g0442	1109	Gene3D	Ribonuclease Inhibitor	563	891	IPR032675	-
	Mtr6g0442	1109	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	35	1055	IPR044974	GO:0006952
	Mtr6g0442	1109	Gene3D	-	380	464	IPR042197	-
	Mtr6g0442	1109	Gene3D	-	215	373	IPR027417	-
	Mtr6g0442	1109	SUPERFAMILY	L domain-like	520	856	-	-
	Mtr6g0442	1109	PRINTS	Disease resistance protein signature	245	260	-	-
	Mtr6g0442	1109	PRINTS	Disease resistance protein signature	322	336	-	-
	Mtr6g0442	1109	PRINTS	Disease resistance protein signature	415	429	-	-
	Mtr6g0442	1109	PRINTS	Disease resistance protein signature	724	740	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr6g0442	Mtr-Chr6	5308782	5314876	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr6g0442	12	770	WRKY Transcription Factor Family	AT4G12020	29.820	9.62e-83	295

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr6g0442	-		-	mtr:MTR_6g015695	1479.54