Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0424 ATGAGTTCATTCACCATAACATTTGTCTCTAAGGTTGTGACTTCTTACTTTTCACCAATATGTTGGATATGTATACTTGAAACGGTTGATCAGTTTTTGAAAGGGGTTTGGAAGTCACCAAGGAGTAAGCTGCACAGAAGAGGAGTTTGCAGAAACCATGGGAGACAGCATCCTGATACTGAAATGAATGAAAATGAGGCTATCAAAGATGAAAATGTTACGCGTTTGCTTGACAAAATAGATTTGTTTATTGCTAATAATCCAGTGGGAGTTGAATCTCGTATGCTAGATATGATTCAATTGCTAGACAAAGATATTGAACAATCAAATGATGTTATACTTCTAGGGATGTGGGGTATGGGAGGCGTTGGTAAAACAACCATTGCGAAAGCCATTTACAATAAAATTGGCCGCGATTTTGAAGGTAGGAGCTTCCTTGCAAATATTAGGGAAGTTTGGGAGCGAAATTTTGGTCAAGTGGAATTACAAGAACAACTTCTGTTTGATATCAACAAAGAAATGACAACTAAGATACAAAACATTGAGTCAGGAAAAAATATTTTAAAGGATAGACTCTGGCATAAAAGAGTATTAATTGTACTTGATGATGTAAATACTCTGGAACAAATGAATGCTTTGTGTGGAAGTAGTAAATGGTTTGGTTCAGGGAGTCGAATAATCATTACTACCAGAGACAAGCATATACTTAGTAGGAATAGAGTTAGCCAGGTATTCAAAATGAAACACTTGGATGAAAATGAGTCAATTGAGTTATTTAGTTGGCATGCATTCAAGAATGCGACTCCCACAAAAGATTTTGCTGAAATTTCTAGAGACGTAGTTGAGTATTCTGGGGGATTGCCTCTAGCTCTAGAAGTCCTTGGGTCATATTTGCTAGATAGGAGTGTAATCGAGTGGCAATGTGTATTGGAGAAACTCAGAAGAATTCCTAATAATCAAGTACAAAAGAAGCTAAAAATAAGCTATGATGCTTTAAATGAAGATATTGAGAAAGAAATATTCCTTAACATAGCTTGTTTTTTTATTGATATGGACACAAATGATGTTACACATATATTAAATGGTTGTGGACTTTTTGCCGAAATTGGAATAAGTATTCTTATTGAGAGAAGCCTTGTAACTGTTGATGCTAAGGACAGGCTTGGAATGCATGATTTGTTGAGAGATATGGGAAGAGAAATTATTCGTGAAGAATCACCGGAGGTGTTTGAGGAGCGTTGCAGACTGTGGTTTCACGAGGATGTGCTTGATGTACTATCAAAACAAACAGGAACAAAATCAATTAAGGGGTTGGCTTTGAAGTTGCCAAGAGCTAATGCAAAATGTCTTAGTACTAAAGCATTTAAGGAGATGACGACGAGGCTCAGATTGCTTCAACTTGATGGGGTAAAACTTGATGGAGATTTTGAAATCCTTTCAAGAAATCTAAGATGGTTGTGTTGGAATGGATTTCCTTTAACACATATACCTACAGATTTTTATAGAGAAAGTTTAGTTTCCATCGAGTTAGAAAATAGCAATGTCAAACGTGTGTGGAAGGAGGCCCAGATGATGGAGAAGCTGAAAATTCTCAATCATAGTCATTCTCATTGTCTGACACACACCCCAGACTTTTCATATTTACCTAATCTTGAAAAGCTAGTACTCAAAGATTGTTCAATGTTGTCTGAGGTTTCTACTAGCATCGGACATCTCAATAAAATTCTTCTGATAAATTTGGAAGATTGCATTAGCCTATGTAGCCTCCCAAGAAGCATCTATAAGTTGAAATCTTTGAAAACTCTCATTCTTTCTGGTTGTATAATGATTGACAAGTTGGAAGAGGACTTGGAACAAATGGAATCATTAACAACTCTGCTTGCAAATAACACTGCAATAAAAAGAGTACCCTTTTCAGTAGTAAGGTCAAAAAGCATTGGATATATCTCTCTGTGCGGCCATGAAGGATTTTCAAGTGATGTGTTTCCATCTATCATCTGGTCTTGGATGTCACCAACAAATGATCTCCCACCCCTATTTCAAACATCTAATATCATGTCATCTCTTGTTCCTCTAGATGTACCACATAGTAGTTCCCACGAACTATCGTCGATGTCCCAGTACCTTCCAAGTCTTCGAAGTCTTTGGATGGAGTGCAGCTCAGAACTTCAACTTTCTCATGATGCAGCAATAATTTTGGATGCCTTGTATGCCACAAATTATAAGGAGTTGGAACAAACTGCAAGTACATCACAAGTATCAATTATGACTACTTCTACATCACAAGTATCAAAACATTCCTCGAAGTCGCTATTAATTCAAATTGGAAAGAATTGCCAAGTCACTAATATTCTGAAAGGGATTATTTTACAGGTTTGA 2379 0.3661 MSSFTITFVSKVVTSYFSPICWICILETVDQFLKGVWKSPRSKLHRRGVCRNHGRQHPDTEMNENEAIKDENVTRLLDKIDLFIANNPVGVESRMLDMIQLLDKDIEQSNDVILLGMWGMGGVGKTTIAKAIYNKIGRDFEGRSFLANIREVWERNFGQVELQEQLLFDINKEMTTKIQNIESGKNILKDRLWHKRVLIVLDDVNTLEQMNALCGSSKWFGSGSRIIITTRDKHILSRNRVSQVFKMKHLDENESIELFSWHAFKNATPTKDFAEISRDVVEYSGGLPLALEVLGSYLLDRSVIEWQCVLEKLRRIPNNQVQKKLKISYDALNEDIEKEIFLNIACFFIDMDTNDVTHILNGCGLFAEIGISILIERSLVTVDAKDRLGMHDLLRDMGREIIREESPEVFEERCRLWFHEDVLDVLSKQTGTKSIKGLALKLPRANAKCLSTKAFKEMTTRLRLLQLDGVKLDGDFEILSRNLRWLCWNGFPLTHIPTDFYRESLVSIELENSNVKRVWKEAQMMEKLKILNHSHSHCLTHTPDFSYLPNLEKLVLKDCSMLSEVSTSIGHLNKILLINLEDCISLCSLPRSIYKLKSLKTLILSGCIMIDKLEEDLEQMESLTTLLANNTAIKRVPFSVVRSKSIGYISLCGHEGFSSDVFPSIIWSWMSPTNDLPPLFQTSNIMSSLVPLDVPHSSSHELSSMSQYLPSLRSLWMECSSELQLSHDAAIILDALYATNYKELEQTASTSQVSIMTTSTSQVSKHSSKSLLIQIGKNCQVTNILKGIILQV* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0424 792 Coils Coil 610 630 - -
Mtr6g0424 792 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 52 791 IPR044974 GO:0006952
Mtr6g0424 792 Pfam NB-ARC domain 99 333 IPR002182 GO:0043531
Mtr6g0424 792 Gene3D - 79 244 IPR027417 -
Mtr6g0424 792 SMART AAA_5 111 251 IPR003593 -
Mtr6g0424 792 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 52 791 - -
Mtr6g0424 792 Gene3D - 249 333 IPR042197 -
Mtr6g0424 792 SUPERFAMILY "Winged helix" DNA-binding domain 320 426 IPR036390 -
Mtr6g0424 792 PRINTS Disease resistance protein signature 114 129 - -
Mtr6g0424 792 PRINTS Disease resistance protein signature 191 205 - -
Mtr6g0424 792 PRINTS Disease resistance protein signature 284 298 - -
Mtr6g0424 792 PRINTS Disease resistance protein signature 594 610 - -
Mtr6g0424 792 Gene3D Ribonuclease Inhibitor 450 771 IPR032675 -
Mtr6g0424 792 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 343 IPR027417 -
Mtr6g0424 792 SUPERFAMILY L domain-like 440 720 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0424 Mtr-Chr6 5090227 5097727 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0424 89 611 WRKY Transcription Factor Family AT5G45050 30.896 5.07e-72 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0424 - - mtr:MTR_6g015455 1546.18