LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr6g0420	ATGGTGAAAAGTTCAACAAGAAGTTATGATGTGTTCTTAAGTTTCAGAGGAGTGGACACTCGTGAATCTTTCACTTCACATCTTTGCACTAGTATTCAAATGTCTGGAATCGTTGTTTTTAGGGACGACGATTCACTTAGAAAAGGAGATCTCATTTCAACAACTCTATTGAGAGCAATTGAAGAGTCTAGAATTGTTATTATAGTTTTTTCAAGAAATTATGCGGGATCGCGATGGTGTTTGATAGAGTTGGAGAAAATAATGGAGTGTTATAGAACTATAGGACTAGTGGTTCTACCGGTTTTTTACGGTGTAGATCCATCTGAAGTACGTCATCAAACTGGTGAATTTGGAAAATCGTTTCAACTTTTTTTGAATAGAAATGGAATTTCAAAGGAAGATGAGTTGAAATGGAGAGATGTACTTCGTGAAGCTGCTGGCCTTTCAGGATTTGTGGTCCTAAAATTCAGGAATGAAAGTGAAGCAATCGACGATATAGTGGAAAATATTTCACGTTTGCTTGACAAGACAGATTTGTTCATTGCTGATAATCCAGTGGGAGTCGAATCTCGAGTAGAAGATATGATTCAACGGTTAAACATCCAACAAACCAATGAAAATGTACTACTAGGGATTTGGGGTATGGGTGGGATTGGTAAAACCACCATTGCAAAAGCCATTTACAATAAAATTGGTCGTAAATTTGCAGGTAGGAGCTTCCTTGCAAATATCAGGGAAGTTTGGGAGCAAAATGATGGACCGGTTTGTTTACAAGAACAACTTCTTTTTGATATTTGCAAAGATACGAAAACTAAGATACGAAGTATTGAGTCGGGAAAAACTATATTAATGGATAGACTATGTCATAAAAGAATTCTTATTGTACTTGATGATGTGAGTGAATTGGAGCAATTGAATGCTTTGTGCGGAAATCGTAAATGGCTTAGTTCAGGGAGTAGAATAATTATCACAACCAGGGATATGCATATACTTAGAGGGAATAGAGTTGACCAAGTGTGCAAAATGAAAGAAATGGATGAAAGTGAATCAATTGAGCTTTTTAGTTGGCATGCATTCAAACAAGCAAGTCCTATAGAAGATTTTGCTGGAATTTCAAGAAATGTAGTGGAGTATTCTGGGGGATTGCCGCTAGCTCTACAAGTCATTGGGTCATATTTGTTTGATAGGGGGATAGCAGAGTGGAAGTGTGTATTGGAGAAACTCATAAGAATTCCTAATGATCAAGTGCAGAAGAAGTTAAAAATAAGCTATGATGGTTTAAACGATGACACTGAGAAGAAAATATTCCTCGACATAGCTTGTTTCTTTATTGGGATGGATCGAAATGATGTTACACTTATATTAAATGGATGTGAACTTTTTGCTGAAATTGGAGTAAGTGTACTTGTTGAGCGAAGCCTTGTAACTGTCGATGATAGGAACAAGCTTGGAATGCATGATTTGCTGCGTGATATGGGAAGAGAAATCATTCGTGAAAAATCAGAAGAGCCTGAGGGGCGTAGCAGATTATGGTTTGATAAGGACGTGTTTGATGTATTATCAGAACAAAATGGAACAAAAGTTGTTGAGGGATTGGCTTTGAAGTTGCCAAGAGAAAATGCAAAATGTTTTAGTACTAAAGCATTTAAGAAGATGGAAAAACTTCGATTGCTTCAACTTGCTGGTGTACAACTTGATGGGGATTTTGAACATCTTTCAAGAAATTTGAGATGGCTTTCATGGAATGGATTTCCTTTAACATGCATTCCTTCAAGCTTTTATCAAGGAAATTTAGTTTCCATTGAGTTAGTAAACAGCAATATCAAACTTGTGTGGAAAAAGACCCAGAGGTTGGAGAAGCTGAAAATACTCAATCTTAGTCATTCTCATTATCTGACGCAAACTCCAGATTTTTCAAACTTGCCTAATCTTGAACAACTAGTACTCACAGATTGTCCAAGGTTGTCAGAGGTTTCTCATAGTATTGAACATCTCAATAAAATTCTTCTGATAAATTTGGAAGATTGTATTGGTCTTCAGAGCCTTCCAAGAAGTATCTATAAGTTGAAATCTCTAAAAACTCTCATTCTTTCCGGGTGTTCAATGATTGACAAGTTGGAAGAGGACTTAGAACAGATGACATCTTTAACCACTCTGATAGCAAATAACACCGCAATAACAAGAGTGCCCTTTTCAGTAGTAAGGTCGAAAAGCATTGGATATATTTCTTTGTGCGGCTATGAAGGATTCTCACGTGATGTGTTCCCATCGATCATTTGGTCTTGGATGTCACCGACAAATAATCTCACTTCCCCATTTCAGACGGTTGCTGCAATGTCATCCCATGTTCCTTTAGATGTACTAAATAGTAGTTCCCATGAACTATCATCTATTTCCAATTACCTTCCATGGCTTCGATGTCTTTGGGTGGAATGCGGATCAAAACTTCAACTTTCTCAAGATGCAGAAAGAATTTTGGATGCCTTATATGCCACAAATTCTAAAGAATTCGAATCATCTGATACATCACAGTTATCAAATGTGAAAACTCATGCATTACTTCAATATTGCAGTCAAGTGCACATTTCAGAATCAAAAACTTCCTTGAGATCTTTTCTTATTCAAATGGGGATGAATTGCCAAGTCACGACAATGTTGAAAGAGAACATATTACAGAATATGGTTGTCAACGGGTGTGAAGGCTGCTTGCTCTCGGGTGATGGTTACCCAAATTGGTTTTCCTTTAATTACGATGGTTGTTCGGTAAAATTTGAAGTCCCTCAAGTGGAAGGGCGCATATTGAAGACAATGATATGCGTTGTCTATTCTTCACCACCAAATAATGTAGTATCAGACGGCCTTAAAAACTTGATGGTGAAAAATTACACTAAAGCCACCATTCAACTATATAAGAGAGAGGCATTAGTCTCCTTCAAAGATGATGAGGGCGAGAGATTAGTATCAAGTATAGAGCCTGGTAACCAAGTGGAGGTTGTCGTTGTTGTTGAGAACGATTTCATTGTGAAAAAGACAATAATTTATCTCATATACGATGAATCAATTGGCAAAACAATGGATCAAAGTCATGTTATAGATAAAGATAACAGAAGGAAGAAAATTCTCAAGTGGTGTTGCTAG	3138	0.3697	MVKSSTRSYDVFLSFRGVDTRESFTSHLCTSIQMSGIVVFRDDDSLRKGDLISTTLLRAIEESRIVIIVFSRNYAGSRWCLIELEKIMECYRTIGLVVLPVFYGVDPSEVRHQTGEFGKSFQLFLNRNGISKEDELKWRDVLREAAGLSGFVVLKFRNESEAIDDIVENISRLLDKTDLFIADNPVGVESRVEDMIQRLNIQQTNENVLLGIWGMGGIGKTTIAKAIYNKIGRKFAGRSFLANIREVWEQNDGPVCLQEQLLFDICKDTKTKIRSIESGKTILMDRLCHKRILIVLDDVSELEQLNALCGNRKWLSSGSRIIITTRDMHILRGNRVDQVCKMKEMDESESIELFSWHAFKQASPIEDFAGISRNVVEYSGGLPLALQVIGSYLFDRGIAEWKCVLEKLIRIPNDQVQKKLKISYDGLNDDTEKKIFLDIACFFIGMDRNDVTLILNGCELFAEIGVSVLVERSLVTVDDRNKLGMHDLLRDMGREIIREKSEEPEGRSRLWFDKDVFDVLSEQNGTKVVEGLALKLPRENAKCFSTKAFKKMEKLRLLQLAGVQLDGDFEHLSRNLRWLSWNGFPLTCIPSSFYQGNLVSIELVNSNIKLVWKKTQRLEKLKILNLSHSHYLTQTPDFSNLPNLEQLVLTDCPRLSEVSHSIEHLNKILLINLEDCIGLQSLPRSIYKLKSLKTLILSGCSMIDKLEEDLEQMTSLTTLIANNTAITRVPFSVVRSKSIGYISLCGYEGFSRDVFPSIIWSWMSPTNNLTSPFQTVAAMSSHVPLDVLNSSSHELSSISNYLPWLRCLWVECGSKLQLSQDAERILDALYATNSKEFESSDTSQLSNVKTHALLQYCSQVHISESKTSLRSFLIQMGMNCQVTTMLKENILQNMVVNGCEGCLLSGDGYPNWFSFNYDGCSVKFEVPQVEGRILKTMICVVYSSPPNNVVSDGLKNLMVKNYTKATIQLYKREALVSFKDDEGERLVSSIEPGNQVEVVVVVENDFIVKKTIIYLIYDESIGKTMDQSHVIDKDNRRKKILKWCC*	1046

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr6g0420	1045	SUPERFAMILY	L domain-like	533	850	-	-
	Mtr6g0420	1045	Gene3D	-	173	339	IPR027417	-
	Mtr6g0420	1045	SMART	till_3	8	148	IPR000157	GO:0007165
	Mtr6g0420	1045	SMART	AAA_5	206	346	IPR003593	-
	Mtr6g0420	1045	Gene3D	-	344	428	IPR042197	-
	Mtr6g0420	1045	SUPERFAMILY	"Winged helix" DNA-binding domain	415	520	IPR036390	-
	Mtr6g0420	1045	PANTHER	RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED	18	1017	-	-
	Mtr6g0420	1045	SUPERFAMILY	Toll/Interleukin receptor TIR domain	5	151	IPR035897	-
	Mtr6g0420	1045	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	18	1017	IPR044974	GO:0006952
	Mtr6g0420	1045	Pfam	NB-ARC domain	189	421	IPR002182	GO:0043531
	Mtr6g0420	1045	PRINTS	Disease resistance protein signature	209	224	-	-
	Mtr6g0420	1045	PRINTS	Disease resistance protein signature	286	300	-	-
	Mtr6g0420	1045	PRINTS	Disease resistance protein signature	379	393	-	-
	Mtr6g0420	1045	PRINTS	Disease resistance protein signature	687	703	-	-
	Mtr6g0420	1045	Gene3D	-	6	172	IPR035897	-
	Mtr6g0420	1045	Gene3D	Ribonuclease Inhibitor	522	898	IPR032675	-
	Mtr6g0420	1045	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	176	439	IPR027417	-
	Mtr6g0420	1045	ProSiteProfiles	TIR domain profile.	7	174	IPR000157	GO:0007165
	Mtr6g0420	1045	Pfam	TIR domain	9	176	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr6g0420	Mtr-Chr6	5034940	5040339	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr6g0420	4	733	WRKY Transcription Factor Family	AT4G12020	31.684	6.50e-84	297

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr6g0420	-		-	cam:101494533	1516.13