Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0357 ATGGCGACGGCGACGGCGACAAAACCTCAACGAACTCCACAGGAAGTAGAAGACATAATCATCCGCAAAATCTTCCTCGTCAGCATCACCGGAGAATCAACAACCACCACCGGAGCAACCGATTCGAGAATCGTTTATCTCGAACTAACCGCCGCAGAGATTCTCAGTGAAGGAAAAGACCTTCTCCTATCTCGCGATGTAATGGAAAGAGTTCTCATCGATCGTCTCTCCGGCGATTTCACTGTCACCGGAGTAGAATCCTCAACGTTTCATTATCTAGTCGGTTGTTACAATCGCGCTCATGATGAATCGAAGAAAATCGTTAACATGAAAGATAAGAATCTTAGGTCAGAAATCGAAACCGTGATTAAACAAGCGAAGAAACTTTGTGTTTCGTATTGTAGGATTCATCTTGCGAATCCCGAGCTTTTTAGTGGAGCTCGGGATTCAAATTTCAGCGCCAGTGGAACTGGCGCTGGAGCATCGCGATCGCCGTTACTGCCTCTGATTATATCAGAGTGCGGTGGTGGCGGTGGAATGGGGGTATTTGGGGGTGAAACAAGAATTGCTGGAGTGAAGAGTCCACCGGGGTTTTTGGATGAGTTTTTTAGGGATAGTGATTTTGAAACTTTGGATAAAATTTTGAAAGGGTTGTACGAGGAATTGAGAGGGAGTGTGATGAAGGTATCTGTGCTTGGGAATTTTCAGGATTCGCTTAGGGTTTTGTTGTTTTTGGTTAGGTTACCTATTGGTGCAAAGAGTCTTGTTAGTCATGAATGGTGGATTCCTAAAGGTGTTTATATGAATGGTCGTGCTATCGAAATGACTAGCATTTTGGGTCCTTTTTTTCATGTTAGTGCTCTTCCTGATCAAAACTTCTTCAAGAGTTCGCCGGATATTGGGCAGCAGTGCTTTTCTGATGCGTCAACTCGGCGACCAGCTGATTTACTATCTTCATTCACCACCATCAAAACTGTCATGAACACCTTATATGATGGCCTATCCGAAGCACTCCGCATCCTTCTTAAAAGTACAGATACTCGTGAAAATGTACTTGAGTATCTTGCAGAGGTGATCAATTTAAATGCTTCTAGGGCTCAGATGCAGGTTGACCCAATTACTTCTGCAAGTTCAGGCATGTTTGTAAGTCTCAGTGCTGTCATGCTTCGCCTCTGCGAACCATTTTTAGATGCAAATTTAACTAAAAGGGATAAAATTGATGCTAAATATGTACACCACTCAAATCGTTTGAATCTAAGTGGGTTAACTGCCCTTCATGCGTCATCAGAAGAAGTTGCTGAGTGGCTTAAAAGTAAAAACCCAGCTACGGCAGTGGATATTAATCAATATAATGATGGTGGGAAACGTCTGCAAGAATCTCAAGAGGCCAGTAGTTCTGGCAGTAATAATGCCAGTCCAAAATACTCATTTATATGTGAATGCTTCTTTATGACTGCAAGAGTGCTCAACTTGGGGCTTTTAAAAGCATTTTCTGACTACAAACACTTAGCTCAGGATATTTCTAGAAGCGAAGATACTCTTTCCACACTTAAAACCATGCAGGAGCAGTCACCTTCTCCCCAATTGGCATTGGATATAACTCGACTTGAGAAAGAACTGGAGTTGTATTCGCAAGAGAAGCTTTGCTATGAAGCTCAGATATTGAGGGATAACACTCTTATTCAGAATGCACTTTCCTTCTACCGCTTGATGATCGTCTGGTTGGTTGGCTTGGTAGGTGGATTTAAGATGCCACTACCAAACCCATGCCCTATGGAATTTTCCACCATGCCTGAACATTTTGTAGAAGATGCCCTGGAACTTCTAATTTTTGCTTCCCGGATTCCAAAGGCCTTAGATGGAGTAGTGCTGGACGAGTTTATGAACTTCATAATTATGTTCATGGGCAGCCCCGACTTTATCAAAAACCCATACCTGAGAGCCAAGATGGTCGAAGTTCTGAATAACTGGATGCCTCGTAGGAGCGGCTCATCTGCTACATCTACTTTATTTGAAGGGCACCAACTGTCTCTTCAGTATCTTGTGAGGAATCTTCTGAAACTTTATGTCGACATTGAGTTCACTGGTTCTCACACACAGTTCTACGATAAGTTTAACATCCGTCATAATATTGCTGAGCTCCTTGAATACCTGTGGAATGTCCCTAGTCATCGCAGTGCTTGGAGACAGATTGCTAAAGAGGAGGAAAAGGGCGTCTATCTCAATTTCTTGAATTTTCTGATTAATGATAGTATCTATCTTCTTGACGAAAGTCTGAACAAAATTCTTGAGCTAAAAGAATTGGAGGCTGAGATGTCGAATACTGCTGAATGGGAGCGACGACCAGTTCAAGAGAGGCAGGAAAGGACCCGGTTATTCCACTCTCAAGAAAATATTATTCGGATAGATATGAAATTGGCCAATGAAGATGTCAGTATGCTTGCATTCACTACAGAGCAGATTACTGCTCCATTCCTGCTTCCCGAGATGGTTGATAGAGTGGCTAGCATGCTCAATTACTTTCTGCTGCAATTGGTGGGTCCCCAAAGAAAATCACTCAGTCTGAAAGATCCCGAAAAATATGAATTTCGTCCAAAGCATTTGCTTAAACAGATTGTGCATGTATATGTTCATCTTGCCAGAGGTGACACAAATTCCATCTTCCCATCTGCCATCTCAAAGGATGGCCGATCATACAATGATCAGTTGTTTAGCTCAGCTGCGGATGTCCTTCGTAGAATTGGGGAGGATGGAAGAATTATTCAGGAATTTATTCAGCTCGGTGCTAAAGCCAAAGTTGCTGCTTCAGAGGCCATGGAAGCTGAAGATACACTAGGAGAAATACCAGATGAATTCCTCGATCCAATTCAATACACTTTGATGAAGGATCCAGTTATCTTGCCTTCCTCAAGAATCACGGTTGATCGTCCTGTCATCCAGAGGCATCTTCTTAGTGACAGCAGTGACCCATTCAACCGTTCTCATCTTACCGCCGATATGCTGATTCCTGATGTTGAACTTAAAGCAAAAATTGAAGAGTTTATTAGGTCTCAGGAAATGAAGAAACATGGTGAAAGCATAAACATACAAAGTTCTAAAGCCACCATTCAAACCACAGATACTTCTGAAATGTTGATTGATTAG 3144 0.4246 MATATATKPQRTPQEVEDIIIRKIFLVSITGESTTTTGATDSRIVYLELTAAEILSEGKDLLLSRDVMERVLIDRLSGDFTVTGVESSTFHYLVGCYNRAHDESKKIVNMKDKNLRSEIETVIKQAKKLCVSYCRIHLANPELFSGARDSNFSASGTGAGASRSPLLPLIISECGGGGGMGVFGGETRIAGVKSPPGFLDEFFRDSDFETLDKILKGLYEELRGSVMKVSVLGNFQDSLRVLLFLVRLPIGAKSLVSHEWWIPKGVYMNGRAIEMTSILGPFFHVSALPDQNFFKSSPDIGQQCFSDASTRRPADLLSSFTTIKTVMNTLYDGLSEALRILLKSTDTRENVLEYLAEVINLNASRAQMQVDPITSASSGMFVSLSAVMLRLCEPFLDANLTKRDKIDAKYVHHSNRLNLSGLTALHASSEEVAEWLKSKNPATAVDINQYNDGGKRLQESQEASSSGSNNASPKYSFICECFFMTARVLNLGLLKAFSDYKHLAQDISRSEDTLSTLKTMQEQSPSPQLALDITRLEKELELYSQEKLCYEAQILRDNTLIQNALSFYRLMIVWLVGLVGGFKMPLPNPCPMEFSTMPEHFVEDALELLIFASRIPKALDGVVLDEFMNFIIMFMGSPDFIKNPYLRAKMVEVLNNWMPRRSGSSATSTLFEGHQLSLQYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWNVPSHRSAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWERRPVQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTTEQITAPFLLPEMVDRVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHVYVHLARGDTNSIFPSAISKDGRSYNDQLFSSAADVLRRIGEDGRIIQEFIQLGAKAKVAASEAMEAEDTLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSSDPFNRSHLTADMLIPDVELKAKIEEFIRSQEMKKHGESINIQSSKATIQTTDTSEMLID* 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0357 1047 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 947 1026 IPR013083 -
Mtr6g0357 1047 Pfam U-box domain 948 1019 IPR003613 GO:0004842|GO:0016567
Mtr6g0357 1047 SMART Ubox_2 951 1014 IPR003613 GO:0004842|GO:0016567
Mtr6g0357 1047 ProSiteProfiles U-box domain profile. 947 1021 IPR003613 GO:0004842|GO:0016567
Mtr6g0357 1047 Coils Coil 533 553 - -
Mtr6g0357 1047 Pfam Ubiquitin elongating factor core 279 931 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Mtr6g0357 1047 PANTHER - 6 1023 - -
Mtr6g0357 1047 SUPERFAMILY RING/U-box 940 1020 - -
Mtr6g0357 1047 CDD RING-Ubox_UBE4A 950 1018 - -
Mtr6g0357 1047 PANTHER UBIQUITINATION FACTOR E4 6 1023 IPR045132 GO:0000151|GO:0030433|GO:0034450
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0357 1 1047 U-box Gene Family AT5G15400 73.580 0.0 1582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0357 K10597 - gmx:100806175 1706.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0357 6 4239644 4248979 Mtr6g0357 6 4239644 4248979 ECH