Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0350 ATGGAATCACAGATTAAGCACGCTCAAGTTGAGAAAGTTATGGGTCGTACTGGATCCAGAGGACAGGTCACTCAGGTTAGAGTCAAGATTCTGCATGAGAATCGCTATATCATGAGGAATGTGAAGGGGCCCATTAGAAAAGGAGATGTCATTGCCCTACTTGAGTCTGAGAGAGAAGCAAGAAGACTCCGATAG 195 0.4513 MESQIKHAQVEKVMGRTGSRGQVTQVRVKILHENRYIMRNVKGPIRKGDVIALLESEREARRLR* 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0350 64 Pfam Ribosomal protein S28e 4 63 IPR000289 GO:0003735|GO:0005840|GO:0006412
Mtr6g0350 64 Gene3D - 1 64 IPR012340 -
Mtr6g0350 64 CDD S1_S28E 6 64 IPR000289 GO:0003735|GO:0005840|GO:0006412
Mtr6g0350 64 Hamap 30S ribosomal protein S28e [rps28e]. 1 64 IPR000289 GO:0003735|GO:0005840|GO:0006412
Mtr6g0350 64 PANTHER 40S RIBOSOMAL PROTEIN S28-1 1 64 - -
Mtr6g0350 64 SUPERFAMILY Nucleic acid-binding proteins 2 64 IPR012340 -
Mtr6g0350 64 PANTHER 40S RIBOSOMAL PROTEIN S28 1 64 IPR000289 GO:0003735|GO:0005840|GO:0006412
Mtr6g0350 64 ProSitePatterns Ribosomal protein S28e signature. 55 63 IPR028626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0350 Mtr-Chr6 4174599 4175952 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0350 1 64 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 79.688 6.21e-33 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0350 K02979 - csv:101212501 84.3445