Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0339 ATGTCTTCATCTGCAGAGAATGAAACACACAGCAATGGTGGTTATACTAACAGAGGGTTGAAAAAGGGTCCATGGTCATCGGAAGAGGATGAAAAATTGAAAGCATATGTGTACTCCCTGCAAGCACAATATCCAACAAAAAAGGGAGTTAGAAATTGGAATTCAGTATCAAAAAGTGCAGGTCTTAGTAGATGTGGTAGAAGTTGTCGTTTGAGATGGATGAATCACCTAGATAAAGATGTGAAAAAGGGCCCATTCAGTAAAGAAGAAGAAAAATTATTCTTTGAGTTACATGCTAAGCTTGGTGGATTCAAATGGAGTAAAATGGCTCTACAGTTGAAGGATGTGATTCTCATTGGTTTGGAATGGTTGTTGGTTCAGTTTTTGGTCTGA 393 0.3817 MSSSAENETHSNGGYTNRGLKKGPWSSEEDEKLKAYVYSLQAQYPTKKGVRNWNSVSKSAGLSRCGRSCRLRWMNHLDKDVKKGPFSKEEEKLFFELHAKLGGFKWSKMALQLKDVILIGLEWLLVQFLV* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0339 130 Pfam Myb-like DNA-binding domain 25 93 - -
Mtr6g0339 130 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 81 IPR017930 -
Mtr6g0339 130 Gene3D - 21 81 - -
Mtr6g0339 130 MobiDBLite consensus disorder prediction 1 16 - -
Mtr6g0339 130 PANTHER MYB DNA-BINDING DOMAIN PROTEIN 1 113 - -
Mtr6g0339 130 Gene3D - 82 115 - -
Mtr6g0339 130 CDD SANT 24 77 IPR001005 -
Mtr6g0339 130 SUPERFAMILY Homeodomain-like 23 108 IPR009057 -
Mtr6g0339 130 MobiDBLite consensus disorder prediction 1 26 - -
Mtr6g0339 130 ProSiteProfiles Myb-like domain profile. 17 77 IPR001005 -
Mtr6g0339 130 CDD SANT 85 113 IPR001005 -
Mtr6g0339 130 SMART sant 82 126 IPR001005 -
Mtr6g0339 130 SMART sant 21 79 IPR001005 -
Mtr6g0339 130 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0339 Mtr-Chr6 4059626 4060653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0339 18 113 MYB Transcription Factor Family AT2G32460 55.208 5.05e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr6g0339 Myb_DNA-bind_6 3.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0339 K09422 - mtr:MTR_5g488170 117.857