Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0333 ATGGGTTGCATTGGTTCAAAACATGCTGTGGCGGGGAATATTTCTCCGGCACCGATCGTCGGAGAAATTGTAGAGGTTGTTCCTTCTTCAAAGGGTCATTCTGGTTTGGTGGTTTTGGATTCAAATTCTAAATCATCATTACATGAAAATAAGAATAGCAAGTTAAAGAAAAATAACTCAAAAAAAAGTAGTGGCTCATTCAGCTTTAGAATTGGTTTTACACAAAGATATGTTGAAGCTGAACAAAATGCTGCTGGTTGGCCTCCTTGGCTTACAGCTTCTGCAGCTGAAGCTGTTCAAGGTTGGATCCCTCTCAAAGCTGATGCTTATCAAAAGTTAGATAAGATTGGACAAGGTACATATAGCAGTGTGTTCCGAGCGCGTGAAGTTGAAACTGGAAAAATGTTTGCTCTAAAAAAAGTGCGGTTTGACACTTTCCAAGCCGAGAGCATAAGGTTCATGGCAAGGGAAATAACAATTTTAAGGAGGCTTGACCATCCAAACATAATGAAGTTGGAAGGAATAATTACTTCTCGAATGTCAAATAGCATATACCTTGTGTTTGAATACATGGAACATGATCTTGCTGGTCTTGTATCTCGTTCTGACATTGTTTTCACCGATGCACAGATAAAATGCTACATGAGACAACTATTAAGCGGACTTGAGCATTGTCATGTACGTGGAATCATGCATAGAGACATCAAAGTATCAAATATCTTGTTGAACAATGAAGGTGTTCTTAAGATAGCTGATTTTGGATTGGCAAACTCAATTAGTCCTAACAATAAGCACCCTTTAACAAGTCGTGTCGTAACTCTATGGTATCGTCCTCCTGAGCTCTTGATGGGAGCAACCAACTATGGAGTATCAGTCGATCTTTGGAGTGTTGGATGTGTATTTGCAGAACTTTTTCTTGGAAAGCCTATTCTTAAGGGGAGAACTGAGGTTGAACAATTACACAAAATTTTCAAACTGTGTGGTTCTCCACCTGAGGAGTTTTGGAAAAAGACCAAGCTTCCTCATGCAACAATGTTCAAACCTCAGACTAATTACGAAAGCTCTCTTCGAGAGAGGTGCATTGATTTTCCTGAATCGACCATAGGTTTACTCGAGACTTTACTGTCTATTGATCCTAGCAAGCGTGGAACCGCCTCCTCGGCTCTAATATCTGAGTACTTCAACACAATGCCATTTGCTTGTAATCCATCAAACCTGCCAAAGTATACACCCAGCAAAGAAATGGATGCTAAAGGTCATGAAGATACATCCAGGTAA 1278 0.3998 MGCIGSKHAVAGNISPAPIVGEIVEVVPSSKGHSGLVVLDSNSKSSLHENKNSKLKKNNSKKSSGSFSFRIGFTQRYVEAEQNAAGWPPWLTASAAEAVQGWIPLKADAYQKLDKIGQGTYSSVFRAREVETGKMFALKKVRFDTFQAESIRFMAREITILRRLDHPNIMKLEGIITSRMSNSIYLVFEYMEHDLAGLVSRSDIVFTDAQIKCYMRQLLSGLEHCHVRGIMHRDIKVSNILLNNEGVLKIADFGLANSISPNNKHPLTSRVVTLWYRPPELLMGATNYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPEEFWKKTKLPHATMFKPQTNYESSLRERCIDFPESTIGLLETLLSIDPSKRGTASSALISEYFNTMPFACNPSNLPKYTPSKEMDAKGHEDTSR* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0333 425 SMART serkin_6 110 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g0333 425 MobiDBLite consensus disorder prediction 45 65 - -
Mtr6g0333 425 SUPERFAMILY Protein kinase-like (PK-like) 105 399 IPR011009 -
Mtr6g0333 425 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524
Mtr6g0333 425 Gene3D Transferase(Phosphotransferase) domain 1 193 425 - -
Mtr6g0333 425 Gene3D Phosphorylase Kinase; domain 1 97 192 - -
Mtr6g0333 425 Pfam Protein kinase domain 110 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g0333 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Mtr6g0333 425 ProSiteProfiles Protein kinase domain profile. 110 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g0333 425 PANTHER CELL DIVISION PROTEIN KINASE 1 425 - -
Mtr6g0333 425 CDD STKc_CDK9_like 110 394 - -
Mtr6g0333 425 PANTHER CYCLIN-DEPENDENT KINASE 1 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0333 Mtr-Chr6 4008104 4010980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0333 102 425 Core Cell Cycle Gene Families AT5G10270 48.235 5.30e-109 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Mtr6g0333 Pkinase 9.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0333 - - gmx:100790917 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0333 6 4008104 4010980 Mtr6g0333 6 4008104 4010980 ECH
Mtr7g0217 7 3483543 3489029 Mtr6g0333 6 4008104 4010980 ECH