Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0330 ATGGCAAGGAAGAGAAAGGTTTCTGAAGCAGTTGAAGAAGGAAGCATGGTATGGGATGATATGATGAAAGAAGCTGCATCACTCGGAGGAGCAAGGCGAGTCCGAAAGAGATTTGTTGGCGTTCGACAAAGGCCATCGGGTAGATGGGTTGCTGAGATTAAAGATACCATTCAAAAGATAAGAGTTTGGTTAGGAACTTTTGATACAGCTGAAGAAGCTGCTAGAGCTTATGATGAGGCTGCTTGTTTGCTTCGAGGCGCAAACACTCGGACAAATTTCTGGCCTTGTTCTCAATCTTCAACTAGTCCTGCTCTTTCTTCAAAGATCACCAATCTCCTCCTTCAAAGACTTAAAGAAAGGAATATGAATAACTCTTGTTCTTCCTTTTCTTCGTCGAAATACACTTCCCTGTTGGGAAGTCCAGAGGAGCGTAGGGAGCAACAACGAGCCAATGATCACGATCGTCAGGAGATGCAACAACAAGTGGATGCATATGGAGAAGTATCAAAAGATTTCTCAATTGATCAATTCACTGATTTCCTCAATGATCATGAGGATTATAGCACAAGCAACAATGAATTGATCAATGACACTGCACAATTCGATTACATTTCGAGTAGTTTTGAATCGTGTTTAACCGAAAACAATGGCTGCAAGGAGGATGAAATGAATATGGAATCTAAATCAAACAATGTGACAGAAACTTCAAGTGGTGATAGCAATTCAGAAGATGGTGAAGAGGAAGTCAATAATGATGTAAGTGTTGATGTTCCTGATTTTCGGTTTCTCGACGATATTGCTCCAACTAGTTACTACTCACCTTTTGAGATTGCTGAGGAAATGGAAGAGCAAATGGTGGAGAATGAGAGCTTTTGTGATGAGCCTTCAATGATTAGAGCTGTTATGAAGAGAATGAAATATGAGAGAAAATTTTCAGCTTCTCTTTATGCATTCAATGGAATACCTGAATGCTTGAAATTGAAACTTGAATCTGGAAACAATAATGGAAGAGGAATTTCTGATCAATTGAACAATCTCAAAGAAGCATGTAACAAAAATAAACTTGAGAAGAAGAAGAAGATGGTGGATGAGAAAAATGAAGAAAATAATCAAACTTCAACTGAAATGGAGTCTTCTTGTTTGTCAAGTAATGATGGTGATCTTTTTCTTTGGAATTCACTTGATCTTCCTCCTATTTGTTTTGTTAACTTACTTGAAAATGGTTCATTCAATTAG 1236 0.3811 MARKRKVSEAVEEGSMVWDDMMKEAASLGGARRVRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSTSPALSSKITNLLLQRLKERNMNNSCSSFSSSKYTSLLGSPEERREQQRANDHDRQEMQQQVDAYGEVSKDFSIDQFTDFLNDHEDYSTSNNELINDTAQFDYISSSFESCLTENNGCKEDEMNMESKSNNVTETSSGDSNSEDGEEEVNNDVSVDVPDFRFLDDIAPTSYYSPFEIAEEMEEQMVENESFCDEPSMIRAVMKRMKYERKFSASLYAFNGIPECLKLKLESGNNNGRGISDQLNNLKEACNKNKLEKKKKMVDEKNEENNQTSTEMESSCLSSNDGDLFLWNSLDLPPICFVNLLENGSFN* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0330 411 MobiDBLite consensus disorder prediction 124 162 - -
Mtr6g0330 411 CDD AP2 36 93 IPR001471 GO:0003700|GO:0006355
Mtr6g0330 411 MobiDBLite consensus disorder prediction 219 251 - -
Mtr6g0330 411 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Mtr6g0330 411 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Mtr6g0330 411 MobiDBLite consensus disorder prediction 124 138 - -
Mtr6g0330 411 MobiDBLite consensus disorder prediction 139 160 - -
Mtr6g0330 411 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Mtr6g0330 411 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 8 350 - -
Mtr6g0330 411 MobiDBLite consensus disorder prediction 358 378 - -
Mtr6g0330 411 Coils Coil 351 375 - -
Mtr6g0330 411 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 8 350 - -
Mtr6g0330 411 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Mtr6g0330 411 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
Mtr6g0330 411 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Mtr6g0330 411 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0330 Mtr-Chr6 3977700 3979254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0330 35 113 AP2-EREBP Transcription Factor Family AT5G19790 73.418 1.13e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr6g0330 AP2 8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0330 K09286 - gmx:100790398 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0330 6 3977700 3979254 Mtr6g0330 6 3977700 3979254 ECH