Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0315 ATGGGACGTTCACCATGTTGTGACAAAGTTGGTTTAAAGAAAGGTCCATGGACTCCAGAAGAAGATCAAAAACTCTTAGCTTATATTGATGAACATGGTCATGGAAGTTGGCGTGCTTTGCCCGCTAAAGCTGGGCTTCAAAGATGTGGTAAGAGCTGCAGATTAAGATGGACTAACTATCTTAGGCCAGATATTAAGAGAGGAAAGTTTAGTTTGCAAGAAGAACAAACCATCATTCAACTTCATGCTCTCTTAGGGAACAGGTGGTCAGCTATAGCAACACATTTGGCAAAGAGAACAGATAATGAGATAAAGAATTATTGGAACACACATCTTAAGAAAAGGTTAACAAAAATGGGAATTGATCCAGTTACACACAAACCTAAAAATGATGCACTTCTTTCATCAAGTGATAATGCTCATTCCAAAACTGCTTCAAATCTTAGTCACATGGCTCAATGGGAAAGTGCTAGACTTGAAGCTGAAGCTAGACTTGTTAGAGAGTCCAAAATTCGTTCACATAATTCACTTCTTCATCATAATCACTTGAAAGCTTGGAATATTAATCTTGAGTCTCCTACTTCAACTTTATCTTTCAATGAGAATGTTGCACCAATTATGAATAGTGGAGAAATTGGAGGTGAAAATAGTAATACTATTAACAATGGTAATGAGAAAAATAATAATGATGATGACAACAATGTTGTGTCTATGATTGAATTTGTTGGGACTAATTCAAGTTCAATTGTGAAAGAAGAAGGTGGTGATGATCAAGATCAAGATCAATGGAAAGGTTATGAAAGTTCATTGACTTTTACATCAAATCTTCATCATGAGTTGACTATGTCAATGGATCAAAGTGTTGATGATGTCATTGCTGAAGAAGGGTTTACTAATCTTTTGCTTAAGACAAATTCTGAAGACTTGAGTTTGTCAGAGAGTGGAGGTGAATCTAACAATGGTGGTGATGGTGGAAGTGGAAGTGGAAGTGAATTCTATGAAGATAACAATAACTACTGGAATAATATTCTTAATTTAGTTAATTCTTCTCCCTCAGATTCTCCAATGTTTTGA 1074 0.3557 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIDEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLAKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSSSDNAHSKTASNLSHMAQWESARLEAEARLVRESKIRSHNSLLHHNHLKAWNINLESPTSTLSFNENVAPIMNSGEIGGENSNTINNGNEKNNNDDDNNVVSMIEFVGTNSSSIVKEEGGDDQDQDQWKGYESSLTFTSNLHHELTMSMDQSVDDVIAEEGFTNLLLKTNSEDLSLSESGGESNNGGDGGSGSGSEFYEDNNNYWNNILNLVNSSPSDSPMF* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0315 357 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mtr6g0315 357 CDD SANT 69 112 IPR001005 -
Mtr6g0315 357 MobiDBLite consensus disorder prediction 308 333 - -
Mtr6g0315 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mtr6g0315 357 CDD SANT 16 61 IPR001005 -
Mtr6g0315 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mtr6g0315 357 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 353 - -
Mtr6g0315 357 MobiDBLite consensus disorder prediction 122 142 - -
Mtr6g0315 357 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mtr6g0315 357 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Mtr6g0315 357 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mtr6g0315 357 Gene3D - 69 116 - -
Mtr6g0315 357 Gene3D - 11 67 - -
Mtr6g0315 357 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mtr6g0315 357 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 353 - -
Mtr6g0315 357 SMART sant 66 114 IPR001005 -
Mtr6g0315 357 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0315 Mtr-Chr6 3849517 3852179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0315 1 171 MYB Transcription Factor Family AT5G15310 87.135 2.19e-107 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr6g0315 Myb_DNA-binding 3.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0315 K09422 - gmx:100101835 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0315 6 3849517 3852179 Mtr6g0315 6 3849517 3852179 ECH