Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0307 ATGTCTCATCTAGGCTTTCTTGTTCTAGGAATTATTTTCTCCTTGATCTCATATGTTCATGGCTATGGTAGAAATTGGGGTTGGATTAATGCACATGCAACCTTCTATGGTGGCAGTGATGCTTCTGGCACAATGGGTGGTGCATGTGGATATGGAAACTTGTATAGTCAAGGTTATGGGACTAATACAGCAGCACTTAGCACTGCATTATTCAACAATGGTTTGAGTTGTGGTGCATGCTATGAAATTAAATGTGCTAGTGACCCAAAATGGTGTCTCCATGGCTCCATTGTTGTTACTGCCACTAATTTCTGTCCACCTGGTGGTTGGTGTGACCCTCCTAATCACCATTTTGATCTCTCTCAACCTGTTTTCCAACACATTGCTCAATATAAAGCTGGTATTGTTCCTGTTGTTTATAGAAGGGTAAGGTGTAGAAGAAGAGGTGGAATAAGGTTCACAATCAATGGTCATTCTTACTTCAATTTAGTCCTTGTGACTAATGTTGGAGGCGCTGGTGATGTGCATTCTGTAGCAATTAAAGGTTCAAGGACTAGATGGCAAGCCATGTCAAGGAATTGGGGACAAAATTGGCAGAGCAACTCTTATTTGAATGGACAAAGTCTTTCATTTGTAGTCACCACTGGTAATGGTCATAGTATTGTGTCATTTAATGTTGCCCCACCCAGTTGGTCCTTTGGACAAACCTACACTGGAAGGCAGTTCCTCTACTAA 735 0.415 MSHLGFLVLGIIFSLISYVHGYGRNWGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEIKCASDPKWCLHGSIVVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYKAGIVPVVYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQFLY* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0307 244 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Mtr6g0307 244 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Mtr6g0307 244 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Mtr6g0307 244 PRINTS Expansin signature 108 125 IPR002963 GO:0009664
Mtr6g0307 244 PRINTS Expansin signature 125 138 IPR002963 GO:0009664
Mtr6g0307 244 PRINTS Expansin signature 149 161 IPR002963 GO:0009664
Mtr6g0307 244 PRINTS Expansin signature 161 182 IPR002963 GO:0009664
Mtr6g0307 244 PRINTS Expansin signature 196 217 IPR002963 GO:0009664
Mtr6g0307 244 PRINTS Expansin signature 225 241 IPR002963 GO:0009664
Mtr6g0307 244 SUPERFAMILY Barwin-like endoglucanases 27 168 IPR036908 -
Mtr6g0307 244 Gene3D - 150 242 IPR036749 -
Mtr6g0307 244 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Mtr6g0307 244 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Mtr6g0307 244 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Mtr6g0307 244 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Mtr6g0307 244 PRINTS Expansin/Lol pI family signature 187 201 IPR007118 GO:0005576
Mtr6g0307 244 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
Mtr6g0307 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Mtr6g0307 244 PANTHER EXPANSIN 9 242 - -
Mtr6g0307 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 160 239 IPR007117 -
Mtr6g0307 244 PANTHER EXPANSIN-A15 9 242 IPR002963 GO:0009664
Mtr6g0307 244 SMART dpbb_1 63 140 IPR007112 -
Mtr6g0307 244 Pfam Lytic transglycolase 63 140 IPR009009 -
Mtr6g0307 244 Pfam Expansin C-terminal domain 151 228 IPR007117 -
Mtr6g0307 244 Gene3D - 19 146 IPR036908 -
Mtr6g0307 244 SUPERFAMILY PHL pollen allergen 147 239 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0307 Mtr-Chr6 3752836 3755328 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0307 1 242 Expansin Gene Family AT2G03090 76.190 4.06e-139 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0307 K20628 - gmx:100799370 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0307 6 3752836 3755328 Mtr3g0904 3 13383144 13386008 ECH
Mtr6g0307 6 3752836 3755328 Mtr6g0307 6 3752836 3755328 ECH
Mtr7g0190 7 3100727 3103197 Mtr6g0307 6 3752836 3755328 ECH
Mtr5g1661 5 18224535 18226702 Mtr6g0307 6 3752836 3755328 ECH