Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0306 ATGGAACACCGTCGTTTTGTGTGGATGAGGAAGGAAGTACGCAAGGATGATGAACTCGTTGAGCAAAAAGAGAAGAAAGTTGATGATGAGCGTTTGATGAGAAAGAATCGCCATCGCCATGCAAAACATATTCGTGATCATTATCATAAGAAGAAGAATAGTGGAGGTGGTTTTCCTGGGATTCCGGTTCACAAAAATGGTGAAGAAACAACGGTTATGATAGAAAAACATTATATTCCTACCAAATATTCTCGAGATAAGTTGCTGGCTTTCTTGGAGGAACATTGCATGTTTGAAAATGCTATAGATCAATCCAATGGTGAAGAAAGTGATGTGCATTCTGTAGCAATCAAAGGTTCAAGGACTAGATGGCAAGCCATGTCAAGGAATTGGGGACAAAATTGGCAGAGCAACTCTTATTTGAATGGACAAAGTCTTTCATTTGTAGTCACCACTGGTAATGGTCATAGTATTGTGTCATTTAATGTTGCCCCACCCAGTTGGTCCTTTGGACAAACCTACACTGGAAGGCAGTTCCTCTACTAA 546 0.4029 MEHRRFVWMRKEVRKDDELVEQKEKKVDDERLMRKNRHRHAKHIRDHYHKKKNSGGGFPGIPVHKNGEETTVMIEKHYIPTKYSRDKLLAFLEEHCMFENAIDQSNGEESDVHSVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQFLY* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0306 181 Pfam Expansin C-terminal domain 107 165 IPR007117 -
Mtr6g0306 181 SUPERFAMILY PHL pollen allergen 107 176 IPR036749 -
Mtr6g0306 181 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 97 176 IPR007117 -
Mtr6g0306 181 PANTHER EXPANSIN 93 179 - -
Mtr6g0306 181 PANTHER EXPANSIN-A15 93 179 IPR002963 GO:0009664
Mtr6g0306 181 PRINTS Expansin/Lol pI family signature 124 138 IPR007118 GO:0005576
Mtr6g0306 181 PRINTS Expansin/Lol pI family signature 162 176 IPR007118 GO:0005576
Mtr6g0306 181 MobiDBLite consensus disorder prediction 37 64 - -
Mtr6g0306 181 Gene3D - 94 177 IPR036749 -
Mtr6g0306 181 PRINTS Expansin signature 98 119 IPR002963 GO:0009664
Mtr6g0306 181 PRINTS Expansin signature 133 154 IPR002963 GO:0009664
Mtr6g0306 181 PRINTS Expansin signature 162 178 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0306 Mtr-Chr6 3742557 3743741 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0306 69 181 Expansin Gene Family AT3G29030 57.143 1.31e-39 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0306 - K20628 mtr:MTR_6g012500 234.958