Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0298 ATGATGGAAGTTATAACAGCAACAGCAACCACCACAAACACAAACACAAACACAACCTCAAACTCCACAAACACTACTACATCTTTAACAACAAATCTAACAAAAGAACAACAACCCGAATCGGAAAACCCGACCCGAATCCATCAACCCATATTATCAAACATAACAAAACCTTTGTCTTTTTCAAATGGTGTTCTCAAACGCCACCACCCCAACCACCATAACAACAACAACAACAACGTTAATAACCTTAACAACGTTGTTGTTACTTACAAAGAATGTCTCAAAAACCACGTGGCAACCCTAGGTGGTCATGCCCTAGACGGTTGTTGTGAATTCATGCCATCACCAACCGCCACCTCCGATGACCCTGCCTCCATAAAATGTGCCGCATGTGGTTGTCACCGGAATTTCCACCGCCGTGAACCGGAAGAACCAATTTCCACCGTTTTTGAATATCAACCTCATCACCGTCACCACCCACCACCACCACCTCTTTTCCAGTCACGTTCACCAAGCTCACCATCACCACCACCGATCTCATCATACCCATCAGCCCCACATATGCTCTTAGCACTCTCCGGCGCCGGAGTTGGTCTTTCTATCCCACCGGAAAACACTGCTGCACCGTTAAACCACCTAAGTTCACCTATGGGAACAAGTAGAAAAAGATTCAGAACAAAATTCACGCAGGAACAGAAGGAAAAGATGCATGAATTTGCTGATAAAGTTGGGTGGAAGATGCAGAAGAGAGATGAAGAAATGGTGAATGGTTTTTGCAATGAAGTTGGTGTTGATAGAAGTGTTCTCAAAGTTTGGATGCATAATAATAAGAACACTTTGGGAAGAAAATTATCATTAGATCATGTTAATGGTAATGGTGACAGCGCCGCCGTGAACGCCTCCGTGGACGGTGGTTCTGGTGGTGGTTGTGAGAATGAGAATAATGGGAGTAATGTTGCTGCTTGTGGTACTACTAATGGGTCTTCTTCTTCTTCTTGA 1002 0.4411 MMEVITATATTTNTNTNTTSNSTNTTTSLTTNLTKEQQPESENPTRIHQPILSNITKPLSFSNGVLKRHHPNHHNNNNNNVNNLNNVVVTYKECLKNHVATLGGHALDGCCEFMPSPTATSDDPASIKCAACGCHRNFHRREPEEPISTVFEYQPHHRHHPPPPPLFQSRSPSSPSPPPISSYPSAPHMLLALSGAGVGLSIPPENTAAPLNHLSSPMGTSRKRFRTKFTQEQKEKMHEFADKVGWKMQKRDEEMVNGFCNEVGVDRSVLKVWMHNNKNTLGRKLSLDHVNGNGDSAAVNASVDGGSGGGCENENNGSNVAACGTTNGSSSSS* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0298 333 Gene3D - 212 282 - -
Mtr6g0298 333 Pfam ZF-HD protein dimerisation region 89 143 IPR006456 -
Mtr6g0298 333 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 91 142 IPR006456 -
Mtr6g0298 333 MobiDBLite consensus disorder prediction 298 333 - -
Mtr6g0298 333 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 16 293 - -
Mtr6g0298 333 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 222 279 IPR006455 -
Mtr6g0298 333 SUPERFAMILY Homeodomain-like 213 283 IPR009057 -
Mtr6g0298 333 MobiDBLite consensus disorder prediction 154 183 - -
Mtr6g0298 333 MobiDBLite consensus disorder prediction 1 44 - -
Mtr6g0298 333 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 16 293 - -
Mtr6g0298 333 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 90 142 IPR006456 -
Mtr6g0298 333 MobiDBLite consensus disorder prediction 309 333 - -
Mtr6g0298 333 MobiDBLite consensus disorder prediction 160 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0298 Mtr-Chr6 3614131 3615689 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0298 25 278 ZF-HD Transcription Factor Family AT5G15210 53.053 4.25e-73 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mtr6g0298 ZF-HD_dimer 3.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0298 - - gmx:100814730 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0298 6 3614131 3615689 Mtr6g0298 6 3614131 3615689 ECH
Mtr6g0298 6 3614131 3615689 Mtr7g0165 7 2725897 2727442 PCT