Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0297 ATGAGGAAGAGACAAGTAGTTGTGAGAAGATCAGAAGATCCACAAAGAAGTGTAGTGAAATATGGAGAGTGTCAGAAGAATCATGCAGCTAATGTTGGAGGTTATGCTGTTGATGGTTGTAGAGAGTTCATGCCAAGTACAAATGGTTCTCTCACTTGTGCTGCTTGTGGTTGTCACAGAAACTTTCACAAAAGAGAAGTTGAAGTTGTTTCTGAGAGTTCTTCACCTCATTCAAATGGTACTTGA 246 0.3984 MRKRQVVVRRSEDPQRSVVKYGECQKNHAANVGGYAVDGCREFMPSTNGSLTCAACGCHRNFHKREVEVVSESSSPHSNGT* 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0297 81 Pfam ZF-HD protein dimerisation region 19 67 IPR006456 -
Mtr6g0297 81 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 12 73 - -
Mtr6g0297 81 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 20 67 IPR006456 -
Mtr6g0297 81 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 21 66 IPR006456 -
Mtr6g0297 81 PANTHER MINI ZINC FINGER PROTEIN 2 12 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0297 Mtr-Chr6 3573880 3574554 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0297 1 79 Zinc finger-homeobox gene family AT1G18835 60.920 3.06e-30 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mtr6g0297 ZF-HD_dimer 2.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0297 - - gmx:100305714 125.561