Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0296 ATGGTTAGACCACCATGTTGTGATAAAGAAGGTGTGAAAAAAGGACCTTGGACTCCTGAAGAAGATATCATTTTGGTTTCTTATATTCAAGAACATGGTCCTGGAAATTGGAAAGCTGTTCCTACCAATACTGGTTTGTTAAGGTGTAGTAAGAGTTGCAGACTTAGATGGACAAATTATCTAAGGCCAGGAATCAAAAGGGGTAACTTCACTGACCAAGAAGAGAAAATGATTATTCATCTTCAAGCTCTTTTAGGAAACAGATGGGCTGCCATAGCTGCATACCTTCCACAAAGAACAGACAATGACATAAAAAACTATTGGAACACTTATTTGAAGAAAAAGCTGAAAAAATTGGAAACAAGTACTTCTTCTGAATCATGTTTAGGTCATGATGAATTCTCAGTTTCTCAACCAATAGCTAGAGGACAATGGGAAAGAAGACTTCAAACTGATATTCACATGGCCAAAAAAGCACTTAGTGAAGCTCTTCAACCAGAAAAAAGCACTTCTAGTAGCAACTTAATGTTACCACTTGAATCAAATTTTTCAAGTGAAAGCTCTTTTTGTTCAACAAAACCTACAACTCAATCTTTGTCTTATGCATCAAGTGCTGATAACATAGCTCGTTTGTTGAAAGGTTGGATGAAAAATAAACCTAAAGAAGGATCGAATGGTAATAACACAAATGTGACACAAAATTATGAGACTAGTGCTTCTAGTGAAGGAATGGAAAAAGGGTCAACAAGTGTTGAATTATCTGAGACTTTTGAATCTTTGTTTGGTTATGAGTCTTTTGATTCATCAAATTCTGATTCTACTACTCTTTTTCAAGATGAGAGCAAACCTGAAAATATTGGTGAAATTATGCCTTTCTCTATGCTTGAAAAATGGCTTCTAGATGATGGTGCTTGTCAAGAGAAAGTTGGTCTTAGTGAAATTAATTATATATTTTGA 957 0.349 MVRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWKAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKKLKKLETSTSSESCLGHDEFSVSQPIARGQWERRLQTDIHMAKKALSEALQPEKSTSSSNLMLPLESNFSSESSFCSTKPTTQSLSYASSADNIARLLKGWMKNKPKEGSNGNNTNVTQNYETSASSEGMEKGSTSVELSETFESLFGYESFDSSNSDSTTLFQDESKPENIGEIMPFSMLEKWLLDDGACQEKVGLSEINYIF* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0296 318 MobiDBLite consensus disorder prediction 221 247 - -
Mtr6g0296 318 Gene3D - 13 66 - -
Mtr6g0296 318 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 312 - -
Mtr6g0296 318 CDD SANT 16 61 IPR001005 -
Mtr6g0296 318 Gene3D - 69 131 - -
Mtr6g0296 318 MobiDBLite consensus disorder prediction 217 247 - -
Mtr6g0296 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Mtr6g0296 318 CDD SANT 69 111 IPR001005 -
Mtr6g0296 318 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 312 - -
Mtr6g0296 318 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mtr6g0296 318 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Mtr6g0296 318 SMART sant 66 114 IPR001005 -
Mtr6g0296 318 SMART sant 13 63 IPR001005 -
Mtr6g0296 318 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mtr6g0296 318 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mtr6g0296 318 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mtr6g0296 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0296 Mtr-Chr6 3546411 3548806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0296 1 312 MYB Transcription Factor Family AT5G62470 50.700 1.93e-100 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr6g0296 Myb_DNA-binding 4.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0296 K09422 - gmx:780542 409.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0296 6 3546411 3548806 Mtr7g0164 7 2692251 2694773 PCT