Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0285 ATGGAGGAAAGAACTGAGATGGATATTAATAAGGTTGATGATTTGATGCCTGGCTTTCGTTTTCATCCCACAGATGAAGAGCTTGTTGGTTTTTACCTCAAGAGAAAAATTCAGCAAAAATCTCTTCCTATTGAACTTATTAAGCAAGTGGATATTTACAAACATGATCCATGGGACCTTCCAAAAGAGCTAGCAAGTAGTGGTGAAAAAGAATGGTATTTCTATTGTCCAAGGGACAGAAAATATAGAAACAGTTCAAGACCTAATAGAGTTACAAGAGCTGGATTTTGGAAGGCAACTGGAACTGATAGACCTATATACTCATCAGATGGAAAATGCATTGGTTTGAAGAAGTCACTTGTCTTCTATAAGGGTAGAGCTGCCAAAGGGATGAAAACTGATTGGATGATGCATGAGTTTAGGCTACCTTGCATTTCAGATTCAAACTCTCCTCCTAAAAAGTTTTCAGATAAAAGTTTCTCTCCAAATGATTCATGGGCAATATGTAGGATCTTCAAGAAAACCAATTCCCTTTCCATGGTACAAAAAGCATTGTCTCACCCTTGGATCTCCCAATTACCAGGAAGTATGGTTAGTGAATTACTCACACAAACAACAAACATCAACCAATTCTGTTCAGAAAATAATATCTCATGCACAACAATAGAACAAGGATCATCAGCAGGAACAAACTTACAAATCAACAAGCATGATATACAACAAGTCTCCAATACCATCAACAATTTCTCAGCTTCAGATTTTCCAAATTACAAACCAATCAACAACATCAACACAATTTCCAAATCCTCACAAATTCAGGTTCCTAATGGAGACATTATTGATAACCTAATGTTCTACACACTTGACGCCAATGGTTCCACAAAGTGCACAATTGATGATAGTTCAATTCTTTCCAACACTAACTATATTGGTTTTGAAGATGCAAATAATCAATATAATGGCTTCTCAATTAGTTTACCTCAAGATATGCAACCAAACATTGTGAATATTCAAGATCAAATGCAGCTTAATCAATGGGAAAATCTTGGAAGAACAATTGAATTTCCATTCAATTTGTCTCCAAGTTTTGATGCTTTGAGGACAAGTGTTACATGGGACTCACCACCTTGCACCAGTGAAATGTCCACAACCTTTGTCACTAGTAAATGTTACACTTAG 1179 0.3613 MEERTEMDINKVDDLMPGFRFHPTDEELVGFYLKRKIQQKSLPIELIKQVDIYKHDPWDLPKELASSGEKEWYFYCPRDRKYRNSSRPNRVTRAGFWKATGTDRPIYSSDGKCIGLKKSLVFYKGRAAKGMKTDWMMHEFRLPCISDSNSPPKKFSDKSFSPNDSWAICRIFKKTNSLSMVQKALSHPWISQLPGSMVSELLTQTTNINQFCSENNISCTTIEQGSSAGTNLQINKHDIQQVSNTINNFSASDFPNYKPINNINTISKSSQIQVPNGDIIDNLMFYTLDANGSTKCTIDDSSILSNTNYIGFEDANNQYNGFSISLPQDMQPNIVNIQDQMQLNQWENLGRTIEFPFNLSPSFDALRTSVTWDSPPCTSEMSTTFVTSKCYT* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0285 392 Gene3D NAC domain 24 179 IPR036093 GO:0003677|GO:0006355
Mtr6g0285 392 ProSiteProfiles NAC domain profile. 15 174 IPR003441 GO:0003677|GO:0006355
Mtr6g0285 392 SUPERFAMILY NAC domain 13 174 IPR036093 GO:0003677|GO:0006355
Mtr6g0285 392 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Mtr6g0285 392 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 390 - -
Mtr6g0285 392 PANTHER NAC DOMAIN-CONTAINING PROTEIN 94-RELATED 1 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0285 Mtr-Chr6 3486764 3490982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0285 1 267 NAC Transcription Factor Family AT1G26870 59.191 7.57e-99 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr6g0285 NAM 2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0285 - - mtr:MTR_6g011860 796.193