Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0275 ATGGCTTTTCCACCTTCTCACACTTTCATCTTTCAAACTCATGAAGATCATCATCATGAAAACATACTTTCTTCTTCAACTTCTCTTAACTCCTATCCTTCCTTTCCACCTCATCAACACTTTCAAGGTAGTGGAAGTAATGGTGGTGCATCATTCATGATGAAGAGATCCATGTCATTTTCAGGCATAGAGAGCAATCATATCAACACCAATAAGTGTGATGAATTAGTGCATGGAGATGAAGATCAATTATCAGATGAAGAAGGGTACTCACAAATGGGTGAAAAGAAGAAGAGGTTGAGTTTAGAACAAGTGAAAGCACTTGAGAAGAGTTTTGAGATTGGAAACAAGCTTGAACCTGAGAGGAAAATGCAATTGGCTAAAGCTTTGGGGTTACAACCTAGACAAGTAGCTATATGGTTCCAAAATAGAAGAGCAAGGTGGAAAACTAAGCAACTTGAGAAAGAATATGAAGTTCTTAAGAAACAATTTGATTCTCTTAAGGCTGATAATAATACACTTAAGGCTCAGAACAACAAATTACATGCAGAGCTACAAACTCTAAAGAAAAGGGATTGCTTTGAAAATGGAACTATTAGCCTAAAAAAAGAAAATGAAGGTTCTTGGAGCAATGGAAGTGATAACAGCTCAGATATGAATCTAGACCTTTCTAGAACACCAAATTCACTTAAGCCTACAAGTATGACACAGCTCCTTCAATGCTCTTCAAGATCAGATCTTCAAGATGAAAGCTTTTGCAACATGTTTAACAACATTGATGAGCAGCAGAGTTTATGGCCTTGGACTGATCATCAACAACACCAATTCCGTTAA 834 0.3693 MAFPPSHTFIFQTHEDHHHENILSSSTSLNSYPSFPPHQHFQGSGSNGGASFMMKRSMSFSGIESNHINTNKCDELVHGDEDQLSDEEGYSQMGEKKKRLSLEQVKALEKSFEIGNKLEPERKMQLAKALGLQPRQVAIWFQNRRARWKTKQLEKEYEVLKKQFDSLKADNNTLKAQNNKLHAELQTLKKRDCFENGTISLKKENEGSWSNGSDNSSDMNLDLSRTPNSLKPTSMTQLLQCSSRSDLQDESFCNMFNNIDEQQSLWPWTDHQQHQFR* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0275 277 Coils Coil 143 191 - -
Mtr6g0275 277 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 277 IPR045224 GO:0003700
Mtr6g0275 277 CDD homeodomain 96 152 IPR001356 GO:0003677
Mtr6g0275 277 MobiDBLite consensus disorder prediction 204 229 - -
Mtr6g0275 277 SUPERFAMILY Homeodomain-like 88 153 IPR009057 -
Mtr6g0275 277 Pfam Homeobox associated leucine zipper 151 190 IPR003106 GO:0006355|GO:0043565
Mtr6g0275 277 Pfam Homeodomain 96 149 IPR001356 GO:0003677
Mtr6g0275 277 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 277 - -
Mtr6g0275 277 Gene3D - 88 165 - -
Mtr6g0275 277 ProSiteProfiles 'Homeobox' domain profile. 91 151 IPR001356 GO:0003677
Mtr6g0275 277 PRINTS Lambda-repressor HTH signature 122 131 IPR000047 GO:0003677
Mtr6g0275 277 PRINTS Lambda-repressor HTH signature 131 147 IPR000047 GO:0003677
Mtr6g0275 277 ProSitePatterns 'Homeobox' domain signature. 126 149 IPR017970 GO:0000981|GO:0006355
Mtr6g0275 277 SMART HOX_1 94 155 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0275 Mtr-Chr6 3280058 3283567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0275 1 270 Homeobox Transcription Factor Family AT5G15150 52.203 2.29e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr6g0275 Homeodomain 3.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0275 K09338 - gmx:100790803 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0275 6 3280058 3283567 Mtr6g0275 6 3280058 3283567 ECH
Mtr6g0275 6 3280058 3283567 Mtr7g0158 7 2572785 2575871 PCT