Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0269 ATGGAAATGATGATGAAGGAAGAGAACGAGAGAAGGAAACTCATTTCCATGGCAGATGATGATTTTCAAGTAATTTCGAAGAGACGACGAAGAGAGCCTCCCTCGGCGGCACTTACTTTGGAGGATAAACAAAGTCAGAAGCAACAAATTTGTCAAAATTCTACTACTAGCACCACAAAGAGAAGTTCAAGATTTCGAGGTGTTAGCAGACATCGATGGACGGGTCGATATGAAGCTCACTTATGGGATAAACTCTCTTGGAATATGACCCAAAAGAAGAAAGGGAAACAAGTTTATCTTGGGGCTTATGACGATGAAGAATCAGCAGCCAGAGCATATGATTTAGCTGCACTAAAGTACTGGGGAACAATGACCGTCACCAATTTTCCCGTCTCAGATTATGAGGAACAGGTTGAGATAATGCAAACTATGACAAAAGAGGAGTACTTAGCAACCTTAAGGAGAAAGAGCAGTGGATTTTCAAGAGGTGCATCAAAGTATAGGGGTGTTGCAAGGCACCACCACAACGGTAGATGGGAAGCACGGATCGGAAGGGTTTTTGGAAACAAGTATCTCTACCTTGGCACCTACAGCACCCAAGAGGAAGCTGCTCGTGCTTATGACATAGCAGCCATTGAGTACAGAGGGAGTCATGCTATAACAAACTTCGACTTGAGTACTTACATGAGATGGTTAAAATCTTCAACAGAAAATATCTCAGAAACAAAAGTTGAAAAACTGGAAGTACCAGAGTCTCAGGCAGCGGCATTTAAATCTAACTATTCTCCAATAGAGGGGTCCAAAACCTTGGCCCTCCACAACGCTACTTATAATTCAGATTATCTGAATTCCGCTCAAAAGTATGAAGTCTTTGACAATAAAACATACCAAATGTCCAACACCAAGTCTTCTTCTTCTCCCACTGCACTTGGGCTACTTTTCCGCTCTACAATATTTCGAGAGTTAGTTCAAAAGAATTCAGACATGTCTGGAGATGAAACCGATTGGGAAGACACAAAGGATAAACAGCCACTGACAGCAGCAGCAAGTGATGATGAGTTGGATGGGATCTTCTGTGATGGAATTGGGGATACCTCTTTTCTGAAACCCCAATGGACACCTTAG 1125 0.424 MEMMMKEENERRKLISMADDDFQVISKRRRREPPSAALTLEDKQSQKQQICQNSTTSTTKRSSRFRGVSRHRWTGRYEAHLWDKLSWNMTQKKKGKQVYLGAYDDEESAARAYDLAALKYWGTMTVTNFPVSDYEEQVEIMQTMTKEEYLATLRRKSSGFSRGASKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGSHAITNFDLSTYMRWLKSSTENISETKVEKLEVPESQAAAFKSNYSPIEGSKTLALHNATYNSDYLNSAQKYEVFDNKTYQMSNTKSSSSPTALGLLFRSTIFRELVQKNSDMSGDETDWEDTKDKQPLTAAASDDELDGIFCDGIGDTSFLKPQWTP* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0269 374 Gene3D AP2/ERF domain 165 226 IPR036955 GO:0003700|GO:0006355
Mtr6g0269 374 Gene3D AP2/ERF domain 63 132 IPR036955 GO:0003700|GO:0006355
Mtr6g0269 374 MobiDBLite consensus disorder prediction 328 348 - -
Mtr6g0269 374 ProSiteProfiles AP2/ERF domain profile. 166 224 IPR001471 GO:0003700|GO:0006355
Mtr6g0269 374 CDD AP2 65 132 IPR001471 GO:0003700|GO:0006355
Mtr6g0269 374 MobiDBLite consensus disorder prediction 328 351 - -
Mtr6g0269 374 ProSiteProfiles AP2/ERF domain profile. 64 130 IPR001471 GO:0003700|GO:0006355
Mtr6g0269 374 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 8 363 - -
Mtr6g0269 374 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 363 - -
Mtr6g0269 374 MobiDBLite consensus disorder prediction 24 65 - -
Mtr6g0269 374 Pfam AP2 domain 63 122 IPR001471 GO:0003700|GO:0006355
Mtr6g0269 374 Pfam AP2 domain 165 216 IPR001471 GO:0003700|GO:0006355
Mtr6g0269 374 SUPERFAMILY DNA-binding domain 165 226 IPR016177 GO:0003677
Mtr6g0269 374 MobiDBLite consensus disorder prediction 39 63 - -
Mtr6g0269 374 CDD AP2 165 226 IPR001471 GO:0003700|GO:0006355
Mtr6g0269 374 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Mtr6g0269 374 PRINTS Ethylene responsive element binding protein signature 206 226 IPR001471 GO:0003700|GO:0006355
Mtr6g0269 374 SUPERFAMILY DNA-binding domain 63 132 IPR016177 GO:0003677
Mtr6g0269 374 SMART rav1_2 166 230 IPR001471 GO:0003700|GO:0006355
Mtr6g0269 374 SMART rav1_2 64 136 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0269 Mtr-Chr6 3198458 3200580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0269 25 278 AP2-EREBP Transcription Factor Family AT5G57390 52.941 1.48e-84 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Mtr6g0269 AP2 7.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0269 - - ahf:112716370 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0269 6 3198458 3200580 Mtr6g0269 6 3198458 3200580 ECH