Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0266 ATGAGCAATGAGATTGTTCAAAAGCCTCCACCATCAATCCTCGTTGGTCGATTCAAAGCTTTGTTGAATCAACGTCGTGAAGAAGATCCTAGGTTGAGAAATTCGCAACCTTCAACAGAAGAAATTGTTCAGATTTACGAGCTTTTGTTGTCTGAACTCACGTGTAATGTTAAACCTATCATCACTGATCTTACTATCATTGCTGAACAACATCGTAATCATGCTAAAGGAATCGCTTTTGCTATTTGCAACCGTATTGTTGAGGTGTCTGCAGATCAAAAGCTACCTTCACTCTATCTCTTGGACAGTATTGTGAAGAATGTTGGCCAGGAATATGTTCGATACTTCTCGCAGCGTCTACCCGAAGTTTTCTGCGTGGCATACAGACAAGTTGATCCAAGTTTACATTCTGCTATGCGACATCTCTTTGGTACCTGGTCAAAAGTCTTCCCTCCTTCTGTCTTACGGAAGATTGACGTGGAATTGCAATTTTCTAAACCAGTTAATAATCAACCATCAGGCGTTAATTCCCTTAGGGCTTCTGAATCTCCTCGACCAACTCATGGGATACATGTTAACCCAAGATACGTAAGACAAATAGAACACTCTACTTCAGTTATTGATAGTGTTGCAGGTGAAAGGTTAGACTCAACAGGAACTGCTGGAAATGCAAATTTCGGTCTTCTTGCTAGTAAGATTAATCAATTTGTCCCAAGTAGGGTTGGAAGATCATCGTCACCACCAAGAATTGGACTTGATAGGCATATGCCCTCATATATGGATGAATATTTAGCTGACAATTCTACTGGTAGGACAGTCGAGAGAGAATCTCCCCATCATGCTGTTGATTATGGCCTAGTTAAAGGATTAGGTAGAGAAGAAGAGTCGAGTGAGTGGTCGCGAAAGCCGTTTTCTGGTGATAGTCGGAAGAGATTTCAAACTTCTATGACATATAGCCTTAGTAACGGACAACCACGTCAAAATCCAAGAGCACTAATTGATGCCTATGGTAGTGACAAAAGCCAAGAAACTTCTGGCAGTAAGCCTTTGTTAGTTGAGCGGCTGGATAGAAATGGTATGGATAAGGTTATGACAACATCATGGCAGAATACTGAAGAGGAGGAGTTCGATTGGGAAGATATGAGTCCGACAGTAGTAGACCATGGTAGAAGTAATGGTTTCCTGCAACCAACTATCGGTTTCTCATCAGAAAAGCCTGTTACTGTTGCAGCCAATGCAACTTCTTCAGTGTCAAGGGTGTTTCCTGGTCTCAATTCAAATATTGAGTACCGTCCACCAGTTTTGCCTGCAGCTTTTGAAACAAGGCACTCCGTAAATGTGCATGCTCCACGTCCTCCCAGCATAACTCCTATATTTCCATCGAAGAATCCTGTTAGGAATCCTTTCGAATCAATAAATGCCAATAGTACCATTGTGAGTCATGGTCTAATCAATAGGCCTTTTCCTATGCATGAACAATCGTTGCACGGTGTTGAGAACAATGATATCAATAAAAGAAACCTGTATCAGCTACCTAATCAGCTTCCTGGTCTGATTTCATCTAACCCGCCAAACAGTGTACAAACACCGTCATTCCAGTTTTTTCCACCTCAGGATCCAGCAGCGTCACAATTTACTTATAGGCCATCTTTGCCAGGTCATGGTCCTGCTATGAGTAACCCCCTGCCAAATGTACGACCTGTTATGCCACTCCCTTTGCCAGGCCAAAGAATCGGAAACAACTCTTTTCATTTCCAGGGGGGAGCTTTGCGACCTTTACCTCCACCTGGCCCACATGCTCCATCCCAGATGCCACCTCATCCCAATCCTAGTCCATTTGTACCAAACCAACAGCCAACTGTTGGATATTCTAATTTGATTAATTCACTCATGGCCCAAGGTGTAATCTCATTGACTAATCAAGCCCCTTCACAGGATTTTGTTGGCATTGAGTTTGATCCAGATACTCTGAAGGTTCGTCATGAATCTGCAATCAGTGCCTTATACGGTAATCTTCCTAGACAGTGCACAACTTGTGGCCTCCGATTCAAATCCCAAGACGAGCACAGCAGTCACATGGATTGGCATGTGACTAAGAACCGTATGTCTAAAAACCGTAAGCAGAAGCCCTCTCGTAAATGGTTTGTGAGTGAGACGATGTGGCTTAGTGGTGCAGAGGCATTGGGAACTGAATCAGCTCCAGGTTTTTTGCCAACCGAGACCACTGAGGAAAAGAAAGAAGATGAAGAGTTGGCAGTTCCGGCCGACGAGGACCAAAATACATGTGCATTATGTGGAGAACCTTTTGAAGAGTTTTACAGTGATGAAACGGAGGAGTGGATGTATAGAGGAGCTGTATACCTTAATGCGCCTAATGGAATAACAACAGGCATGGACAGGTCGCAGTTAGGCTCCATTATTCATGCTAAATGCAGATCTGAATCTACCCCGTGTGAAGATTTTGTGATGGACGAAGGGGGTACCTATGAAGAAGGCAGTCAAAGAAAACGAATGCGGAGCTGA 2523 0.434 MSNEIVQKPPPSILVGRFKALLNQRREEDPRLRNSQPSTEEIVQIYELLLSELTCNVKPIITDLTIIAEQHRNHAKGIAFAICNRIVEVSADQKLPSLYLLDSIVKNVGQEYVRYFSQRLPEVFCVAYRQVDPSLHSAMRHLFGTWSKVFPPSVLRKIDVELQFSKPVNNQPSGVNSLRASESPRPTHGIHVNPRYVRQIEHSTSVIDSVAGERLDSTGTAGNANFGLLASKINQFVPSRVGRSSSPPRIGLDRHMPSYMDEYLADNSTGRTVERESPHHAVDYGLVKGLGREEESSEWSRKPFSGDSRKRFQTSMTYSLSNGQPRQNPRALIDAYGSDKSQETSGSKPLLVERLDRNGMDKVMTTSWQNTEEEEFDWEDMSPTVVDHGRSNGFLQPTIGFSSEKPVTVAANATSSVSRVFPGLNSNIEYRPPVLPAAFETRHSVNVHAPRPPSITPIFPSKNPVRNPFESINANSTIVSHGLINRPFPMHEQSLHGVENNDINKRNLYQLPNQLPGLISSNPPNSVQTPSFQFFPPQDPAASQFTYRPSLPGHGPAMSNPLPNVRPVMPLPLPGQRIGNNSFHFQGGALRPLPPPGPHAPSQMPPHPNPSPFVPNQQPTVGYSNLINSLMAQGVISLTNQAPSQDFVGIEFDPDTLKVRHESAISALYGNLPRQCTTCGLRFKSQDEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSETMWLSGAEALGTESAPGFLPTETTEEKKEDEELAVPADEDQNTCALCGEPFEEFYSDETEEWMYRGAVYLNAPNGITTGMDRSQLGSIIHAKCRSESTPCEDFVMDEGGTYEEGSQRKRMRS* 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0266 840 SMART 558neu5 41 163 IPR006569 -
Mtr6g0266 840 Gene3D - 31 163 IPR008942 -
Mtr6g0266 840 MobiDBLite consensus disorder prediction 270 289 - -
Mtr6g0266 840 ProSitePatterns Zinc finger C2H2 type domain signature. 676 696 IPR013087 -
Mtr6g0266 840 MobiDBLite consensus disorder prediction 171 190 - -
Mtr6g0266 840 CDD CID_Pcf11 46 163 - -
Mtr6g0266 840 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 12 816 - -
Mtr6g0266 840 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 12 816 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Mtr6g0266 840 ProSiteProfiles CID domain profile. 38 166 IPR006569 -
Mtr6g0266 840 SUPERFAMILY ENTH/VHS domain 37 165 IPR008942 -
Mtr6g0266 840 MobiDBLite consensus disorder prediction 591 615 - -
Mtr6g0266 840 MobiDBLite consensus disorder prediction 589 619 - -
Mtr6g0266 840 Pfam CID domain 56 157 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0266 Mtr-Chr6 3175152 3181479 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0266 1 840 C2H2 Transcription Factor Family AT4G04885 45.382 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr6g0266 CID 4.7e-13 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0266 K14400 - gmx:100794796 820.846