Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0264 ATGGAAAAAATAATGGTAGAAAGTTCTACCAAGATTGCTTTTATTCTCTTGGTTACTTTCGCCATTACTATTCCATGCCTTGAGGCTGCACATGTTTTATCTCCTGCTGAAATTGATGATTTTGTCAAAGCTCGAGCTGAAGAAGCCCATAAAGTTGCTGTTGAAACATATGTTCCAATTCCTGAAGGAGTTGCTCATGACCTTAATGTCGCCGTTCACATGTCAATGGAAGCAGAAGAAAACAACACAAGAAGGGAAATGAGGCAAAAAGGTAAAAAACATGATGGACCATGTGAAGCAACCAACCCAATTGATAGTTGTTGGAGGTGCAAAGCCGATTGGGCTGCGAATCGATTTCAATTAGCCAAGTGTAGTAAGGGCTTTGGAAGAAAGACAACTGGTGGGCTTGGAGGTCCAATCTATGTGGTCACTGATGAGTCTGATAATGACATGGTAAACCCTAAACCTGGAACCCTTAGATTTGGTGCTGTCCAAAAGGGACCATTATGGATCACTTTTGCACGTAGCATGGTCATTAGATTGAACCAAGAATTGATGGTTTCTTCTGACAAAACAATTGATGGTCGTGGAGCTAATGTTCAAATTAGGGATGGTGCTGGAATTACAATGCAATTTGTTAATAATGTTATCATTCATGGACTTCATATTCAAAATATTAAAGCTAAACCAGGTGGTTTGATTAGGGATTCTTTTGACCATACTGGACAAAGAACAAGAAGTGATGGTGATGCTATCTCTATTTATGGATCTTCCAATATTTGGATTGATCATCTTTCACTCTCTGAATGTGAGGATGGTCTTGTTGATATTATCCAAGGTTCTACTGGTATCACAATCTCAAATTGTCACATGACAAAACATAATGATGTTATGTTATTTGGAGCTAGTGATTCATACACTGGTGACAAGCTTATGCAAATAACAGTAGCATTCAACCACTTTGGACAAGGATTGATTCAAAGAATGCCAAGGTGCAGATATGGTTTTGTTCATGTTTTGAACAATGACTATACTCATTGGATAATGTATGCAATTGGTGGAAGCTCATCACCAACAATTCTTAGCCAAGGAAATCGTTTCATTGCTCCAGACAATGGTGCTGCAAAGGAAGTCACACATAGAGATTATGCTCCACCTGATGTATGGAAGAATTGGCAATGGAGTTCAGAATTGGATGTATTCATGAATGGTGCTAAATTTGTTCCATCTGGTGCACCTATTAATAGGAAACCATTCAAAAAAGCATATATGATGCAACCAAGAGATGGATCTCATGTTAGTAGACTAACAAGGAATGCTGGTGCCCTAAATTGTGTAGTAGGAAAGCCTTGTTAG 1356 0.3864 MEKIMVESSTKIAFILLVTFAITIPCLEAAHVLSPAEIDDFVKARAEEAHKVAVETYVPIPEGVAHDLNVAVHMSMEAEENNTRREMRQKGKKHDGPCEATNPIDSCWRCKADWAANRFQLAKCSKGFGRKTTGGLGGPIYVVTDESDNDMVNPKPGTLRFGAVQKGPLWITFARSMVIRLNQELMVSSDKTIDGRGANVQIRDGAGITMQFVNNVIIHGLHIQNIKAKPGGLIRDSFDHTGQRTRSDGDAISIYGSSNIWIDHLSLSECEDGLVDIIQGSTGITISNCHMTKHNDVMLFGASDSYTGDKLMQITVAFNHFGQGLIQRMPRCRYGFVHVLNNDYTHWIMYAIGGSSSPTILSQGNRFIAPDNGAAKEVTHRDYAPPDVWKNWQWSSELDVFMNGAKFVPSGAPINRKPFKKAYMMQPRDGSHVSRLTRNAGALNCVVGKPC* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0264 451 Pfam Pectate lyase 184 367 IPR002022 -
Mtr6g0264 451 Pfam Pectate lyase, N terminus 36 86 IPR007524 GO:0030570
Mtr6g0264 451 SUPERFAMILY Pectin lyase-like 102 442 IPR011050 -
Mtr6g0264 451 PANTHER PECTATE LYASE 18-RELATED 9 451 IPR045032 GO:0030570
Mtr6g0264 451 MobiDBLite consensus disorder prediction 79 98 - -
Mtr6g0264 451 PANTHER PECTATE LYASE 9 451 - -
Mtr6g0264 451 PRINTS Pollen allergen Amb family signature 124 141 IPR018082 -
Mtr6g0264 451 PRINTS Pollen allergen Amb family signature 148 173 IPR018082 -
Mtr6g0264 451 PRINTS Pollen allergen Amb family signature 184 200 IPR018082 -
Mtr6g0264 451 PRINTS Pollen allergen Amb family signature 248 269 IPR018082 -
Mtr6g0264 451 PRINTS Pollen allergen Amb family signature 328 347 IPR018082 -
Mtr6g0264 451 PRINTS Pollen allergen Amb family signature 350 369 IPR018082 -
Mtr6g0264 451 PRINTS Pollen allergen Amb family signature 392 416 IPR018082 -
Mtr6g0264 451 PRINTS Pollen allergen Amb family signature 422 445 IPR018082 -
Mtr6g0264 451 SMART amb_all 176 373 IPR002022 -
Mtr6g0264 451 Gene3D - 101 444 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0264 Mtr-Chr6 3153005 3154908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0264 16 451 Polysaccharide Lyase AT5G15110 54.060 2.85e-179 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0264 K01728 - gmx:100810615 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0264 6 3153005 3154908 Mtr4g3894 4 52696723 52698281 ECH
Mtr6g0264 6 3153005 3154908 Mtr6g0264 6 3153005 3154908 ECH
Mtr7g0126 7 2276301 2278222 Mtr6g0264 6 3153005 3154908 ECH
Mtr5g1563 5 16826320 16828456 Mtr6g0264 6 3153005 3154908 ECH