Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0251 ATGAAATCAAACAAAGTTTGTGCAGCATGCAAGTATCAAAGGAGAAAGTGTCCCAAAGATTGTCCTTTAGCTCCTTACTTTCCAACTGATAAACCAAAAAGGTTTGACAATGTTCACAATTTGTTTGGTGTTTCCAACATAGTGAAGTTACTAAAGAATATTAAAGACAACGATGTAAGAGCCGATGCAATGGATTCAATTATTTTTGAGTCGGATATTCGTGCAGAATTCCCCGTTCATGGATGTGTTGGTGTTATTCATCAATATTTAGGTTTGATACGCGAGTCTACGGAAGAGTTAAATCGCACACAAAGTTTACTAGCTATTTGTAAGATGAACAACCATTCACAACAACAAAATCTCCACTCCTCCCTACCTTCCACTGCTCCTCAAGAAACAAATATTCCATCGTTTGCGTTGGATGACCTTGATAACGAAGAATTGAATGACCTTGATGGTGGTGTTGATGCCGGTTGGGATCTTGAACCAGATGACTTTTTTAAGGACATAGAAGAATATAAGGAAAGGATGTGTATGAATAATTAG 546 0.3736 MKSNKVCAACKYQRRKCPKDCPLAPYFPTDKPKRFDNVHNLFGVSNIVKLLKNIKDNDVRADAMDSIIFESDIRAEFPVHGCVGVIHQYLGLIRESTEELNRTQSLLAICKMNNHSQQQNLHSSLPSTAPQETNIPSFALDDLDNEELNDLDGGVDAGWDLEPDDFFKDIEEYKERMCMNN* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0251 181 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Mtr6g0251 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 132 - -
Mtr6g0251 181 ProSiteProfiles LOB domain profile. 5 107 IPR004883 -
Mtr6g0251 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 27-RELATED 3 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0251 Mtr-Chr6 3030053 3030598 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0251 3 111 AS2 family AT3G47870 51.376 2.79e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr6g0251 LOB 4.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0251 - - mtr:MTR_6g011250 370.548