Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0248 ATGTTCGGCAATGCTCATCGTTTGTTTGGTGTTTCAAACATACAGAAGATACTAAACGAAATTAAGGATGGTGGTCAAAGAGATGAAGCAATGAAATCAATTATTGTTGAGTCGAAAATTCGTGCAAATTTCCCAATTCATGGATGTCTTGGTGTTATTCATATGTATGCAGGTATGATAAATAAGTCTTCTAAAGAGTTAGATCAATTAAAATGGCTATTAGCTTATTGTAAGCAAAACAACCATTTACAACAACAAAATCTTTATTCCTCCATACCTTCTACTAGTTTTCAAGTGTTTAACAATTATGGTGATGTTGGTAATTATTATCAAAATAGTGAAAATAATATGATGATACCATCTTCTTCTTATGTTAGTCAAACCACCCCTCATGATGTTAATAATTCTCCAATTGATACAAACTTGAATATAAATTCTATGGATACAAGGGGTGCAAAATTGAGTGGTGATAGCAACCTTGGTGGGGACAATGTCAAATTAGAATTGGACAATAATGAAGATTTGGACGACTTTGATATACAAATTAGAACAATATTTGATTGGGAGGAAACAGAAGGATTGTTAGATACTGATGAATTACCTAGTTCGGATTTTAATATAGATATGAATGGTCCAACACTATAG 645 0.3194 MFGNAHRLFGVSNIQKILNEIKDGGQRDEAMKSIIVESKIRANFPIHGCLGVIHMYAGMINKSSKELDQLKWLLAYCKQNNHLQQQNLYSSIPSTSFQVFNNYGDVGNYYQNSENNMMIPSSSYVSQTTPHDVNNSPIDTNLNINSMDTRGAKLSGDSNLGGDNVKLELDNNEDLDDFDIQIRTIFDWEETEGLLDTDELPSSDFNIDMNGPTL* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0248 214 Pfam Lateral organ boundaries (LOB) domain 2 70 IPR004883 -
Mtr6g0248 214 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 137 - -
Mtr6g0248 214 PANTHER LOB DOMAIN-CONTAINING PROTEIN 27-RELATED 1 137 - -
Mtr6g0248 214 ProSiteProfiles LOB domain profile. 1 74 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0248 Mtr-Chr6 3005699 3006343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0248 1 67 AS2 family AT3G47870 50.746 5.12e-14 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr6g0248 LOB 2.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0248 - - mtr:MTR_6g011200 429.098