Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0228 ATGGGAAGGCCTCCTTGTTGTGATAAGACCAATGTGAAAAGAGGTTTATGGACTCCTGAGGAAGATGCTAAAATACTTGCTTATGTAGCCAATCATGGAATTGGAAATTGGACAGCTGTTCCAAAGAAAGCAGGGTTGAATAGGTGTGGTAAGAGTTGCAGGCTAAGATATACAAATTATCTAAGACCTGATCTGAAGCATGATAGTTTTACACCTGAAGAAGAAGAGCTCATTATTACCCTTCATGGAGCTATAGGAAGCAGATGGTCTTGCATTGCAAAAAGACTACCTGGAAGAACAGACAATGATGTCAAGAATTACTGGAACACAAAACTAAGAAAGAAGCTTATGAAAATGGGAATTGATCCAGTAACTCATAAGCCAGTTTCACAAGTGATTTCTGACTTAGGAAACATTAGTAGCCTCACAAACACAAACTCTCAAAACAACCTAATTTTGGATCACACAAAAGATGAACAAGTTCAACCATTGCAACATCAAGTTCAATATCACCAATTCACAAACCAAGAGAATTTCCAACAACATGTCTTAAGTGAAGTTGCATCATCAAGTTCATCTTCATCTTCTTCTAATCTCACAAGGTTAAACTCGCCGATTTCGTACTCCTGCAACACTTCACAAGCTCAAATTAATTCTAACTTTGATTGGAGTGATTTTCTTCATAATGATGAGCCTTTAGTGTGGACAGATATTCAACAAATTCAACAATGTGACATACAAAGGGTAATGTCATCATTGACCCTCTCAGGTATAATGCAAAATGAAGGTGAAATTTCCAATAATTTCAATAGTAATGGTGATGATAAACAAGGTGGTTCAAGTGAAGGTTTTGAGGATGTTGCTTGTGATGCAAGTAAAGAATATCAAGGTCATAAGAAATGTGAAGGAAATTCATTTTCAGGGAATTCATTTGTGGATGGTATTTTGGACAAGGACAGTGAGATAAGGGCAACATTTCCAGAAATTTTGGATGCTTCTTTTGATTATTAA 1011 0.364 MGRPPCCDKTNVKRGLWTPEEDAKILAYVANHGIGNWTAVPKKAGLNRCGKSCRLRYTNYLRPDLKHDSFTPEEEELIITLHGAIGSRWSCIAKRLPGRTDNDVKNYWNTKLRKKLMKMGIDPVTHKPVSQVISDLGNISSLTNTNSQNNLILDHTKDEQVQPLQHQVQYHQFTNQENFQQHVLSEVASSSSSSSSSNLTRLNSPISYSCNTSQAQINSNFDWSDFLHNDEPLVWTDIQQIQQCDIQRVMSSLTLSGIMQNEGEISNNFNSNGDDKQGGSSEGFEDVACDASKEYQGHKKCEGNSFSGNSFVDGILDKDSEIRATFPEILDASFDY* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0228 336 CDD SANT 69 112 IPR001005 -
Mtr6g0228 336 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Mtr6g0228 336 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mtr6g0228 336 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mtr6g0228 336 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mtr6g0228 336 PANTHER F14D16.11-RELATED 1 336 - -
Mtr6g0228 336 CDD SANT 17 61 IPR001005 -
Mtr6g0228 336 Gene3D - 68 131 - -
Mtr6g0228 336 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mtr6g0228 336 Gene3D - 7 67 - -
Mtr6g0228 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Mtr6g0228 336 SMART sant 13 63 IPR001005 -
Mtr6g0228 336 SMART sant 66 114 IPR001005 -
Mtr6g0228 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Mtr6g0228 336 MobiDBLite consensus disorder prediction 265 284 - -
Mtr6g0228 336 PANTHER F14D16.11-RELATED 1 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0228 Mtr-Chr6 2715806 2718131 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0228 1 336 MYB Transcription Factor Family AT3G28470 48.148 9.42e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr6g0228 Myb_DNA-binding 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0228 K09422 - gmx:100811448 442.965