Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0220 ATGGGTGGTGGTGATCAGAAAAATGTTTCCATTAATGTTAAGAAAAAGAAAAATGGTTCTTTTAGGTCCATTTTCATGCATGCTGATGTTCTTGATTGTTTTTTCATGGCTTTTGGTTTGATTGGTGCCATTGGTGATGGACTAATGACTCCTTTGGTTTTGTTTATCACAAGCAGAATTATGAACTCTATTGGTACTATTTCTGGCTCATCAAGCACCAATTTTGTACATAACATCAATGAGAATGCTCTTGTTTTGTTATATTTGGCATGTGCCTCTTTTGCTGCTTGCTTCCTAGAGGGTTATTGTTGGACAAGAACAGGTGAAAGACAAGCTGCAAGAATGAGAGCTAGATACTTAAAAGCAGTTCTAAGACAAGAAGTAGCATACTTTGATTTGCATGTTACAAGCACATCAGAAGTCATCACAAGTGTCTCTAACGACAGCCTAGTGATTCAAGATGTTCTTAGTGAAAAGGTTCCAAATTTTTTGATGAATGCATCTATGTTCATTGGAAGCTACATAGTGGCATTTGCATTGTTATGGAGATTAGCAATTGTTGGGTTCCCTTTTGTGGTACTACTTGTGATTCCTGGTTTCATGTATGGGAGAACTTTGATGGGATTGGCTAGAAAAATGAGAGAAGAGTACAATCAAGCCGGTACAATAGCAGAACAAGCAATATCTTCAATTAGAACTGTTTATTCCTTTGCAGGAGAAAGCAAAACCATAGCTGCTTTCTCTAATGCTTTGGAAGGATCAGTGAAGTTGGGATTGAAACAAGGCTTAGCTAAAGGCTTGGCCATAGGAAGCAATGGTGTTGTTTTTGCTATATGGTCCTTTATGTCCTTTTATGGTAGCAGAATGGTCATGTATCATGGTGCTAAAGGTGGTACTGTATTTGCTGTTGGAGCATCATTAGCACTTGGTGGATTGGCTTTAGGAGCTGGTTTATCAAATGTGAAGTACTTCTCAGAAGCAAGTGTTGCAGGAGAAAGAATAATGGAAATGATAAAAAGAGTTCCAAAGATAGATTCTGAAAACATCGAAGGTGAAATTCTAGAGAAAGTCTTAGGGGAAGTTGAGTTCAACCATGTTGAATTTGTGTATCCATCAAGACCAGAAAGTGTGGTCCTAAATGATTTTTGTTTAAAGGTTCCATCAGGGAAAACGGTTGCATTAGTAGGAGGAAGTGGTTCAGGAAAATCAACAGTTGTATCACTTTTGCAAAGATTTTATGATCCAATTGGTGGAGAGATTCTTCTTGATGGAGTTGCTATTCATAAGTTGCAACTTAAGTGGCTTAGGTCACAAATGGGTTTAGTAAGTCAAGAACCTGCTTTGTTTGCAACAAGCATTATGGAGAATATACTTTTTGGAAGAGAGGATGCTACATATGAAGAAATCGTGGATGCTGCTAAAGCTTCTAATGCTCATAATTTCATTTCAATGTTGCCACAAGGATATGATACTCAGGTTGGGGAGAGAGGAGTTCAGATGTCAGGGGGACAAAAACAAAGGATTGCCATTGCAAGAGCCATAATAAAAATGCCTAAAATTTTATTACTAGATGAAGCAACAAGTGCACTTGATTCTGAATCCGAACGAGTTGTTCAAGAAGCTCTAGACAAAGCGGCGGTTGGACGCACCACCATCATCATCGCTCACCGCTTATCAACCATCCAAAATGCAGACATCATTGCAGTTGTCCAAAATGGTAAGATCATGGAAACGGGATCTCACGAAAGCCTCATGCAAAATGAAAATTCTCTTTACACCTCCCTCGTTCGTCTCCAACAAACTAGAAATGATCAAACTGATGACACTCCATCTATCATGAATAGAGGTCACATGCAAAACACGAGTAGTCGTAGACTCGTAAGTCGTTCTAGCAGCTCTTTCAACTCAATGACACATGGTGGTGATGATATCCTTAATTATAACAATGTTGTTGAAGATATTGTTAATAATGTTGTTGTAGTTGATGATCGCAATAATCATAATAGTATAAATAATACGAAAAAGGAGAAGGTCAAGGTTCCTTCGTTTCGAAGGTTGTTGGCTATGAATGTGCCTGAATGGAAGCAAGCATGTTTGGGTTGTATAAATGCAGTTTTATTCGGTGCAATTCAACCTGTATATTCGTTTGCATTGGGGTCGGTTGTATCAGTTTATTTTCTGGAGGACCATGATGAGATTAAGAAGCAAATTAGGATCTATGTGTTTTGTTTTCTAGGGTTGGCTGTTATCTCATTGGTTGTTAATGTACTTCAACATTATAGCTTTGCTTACATGGGAGAGTACTTGACTAAGAGGGTTAGAGAAAGGATGTTTTCCAAGATACTCACTTTTGAAGTTGGTTGGTTTGATGAAGATCGAAATTCTACAGGTTCTGTTTGCTCTAGACTTGCCAAAGATGCTAATGTGGTAAGATCTTTGGTGGGTGATAGATTGGCTCTAGTGGTACAAACAATTTCAGCAGTGGTAATAGCATTCACAATGGGACTAATCATTGCATGGAGACTCGCCATTGTTATGATAGCAGTTCAACCAGTTATCATATGTTGTTTCTATACAAGACGTGTCCTTCTTAAGAACATGTCAAGCAAAGCCATCAAGGCCCAAGATGAATGTAGCAAAATAGCTGCTGAAGCAGTTTCAAATCTAAGAACCATCAATGCTTTTTCATCTCAAGATAGAATTCTCAAAATGCTTGAAAAAGCACAACAAGGACCAAGCCATGAAAGTATTAGACAGTCCTGGTTTGCAGGTATTGGACTTGCATGTTCACAAAGTCTCAATTTTTGTACTTGGGCTTTGGACTTTTGGTATGGTGGAAAACTTGTGTCGCAAGGTTATATCTCGGCTAAGGCTTTATTCGAGACTTTTATGATTTTGGTAAGTACAGGAAGAGTTATTGCTGATGCAGGTAGCATGACAAATGATCTTGCTAAAGGCTCTGATGCCGTTGGATCGGTTTTTGCAGTCCTCGATCGGTATACAAAAATAGAGCCTGATGATTTAGAAAGTTACCAAGCTGAAAAGTTAATAGGAAAAATTGAACTTCGTGATGTATATTTTTCATATCCAGCTAGACCTAATGTTATGATTTTTCAAGGATTCTCGATTAAAATTGATGCAGGAAAATCAACGGCTTTGGTAGGGGAAAGTGGTTCTGGAAAATCGACAATCATAGGACTAATTGAGAGATTCTATGACCCACTTAAAGGGATAGTGACAATTGACGGTAGAGACATAAAGACATATAATCTCAGGTCATTGAGGAAACACATTGCCCTTGTGAGTCAAGAACCAACATTGTTTAGTGGTACCATAAGGGAAAATATTGCATATGGAGCTTATGATGATACGGTTGATGAGAGTGAGATTATAGAGGCATCAAAGGCTTCAAATGCTCATGATTTTATATCAAGCTTAAAAGATGGTTATGATACTTTGTGTGGTGACAGAGGAGTTCAACTTAGTGGTGGTCAAAAACAAAGAATTGCAATAGCTAGAGCTATATTGAAGAATCCAGAGGTGTTGCTTTTGGATGAAGCAACAAGTGCACTTGATAGTCAATCTGAGAAATTAGTCCAAGATGCTTTAGAAAGGGTTATGGTTGGAAGGACAAGTGTGGTTGTAGCACATAGGTTGAGTACTATACAAAATTGCGATTTGATTGCTGTTTTAGACAAGGGAAGTGTTGTTGAGAAAGGAACACATTCATCTTTGTTGTCTAAAGGGCCAAGTGGAGCTTATTACTCTTTGGTAAGTCTACAAAGAAGACCAACCAACATTACTATTGATTCTTCACATGAAATCAACTAA 3831 0.3811 MGGGDQKNVSINVKKKKNGSFRSIFMHADVLDCFFMAFGLIGAIGDGLMTPLVLFITSRIMNSIGTISGSSSTNFVHNINENALVLLYLACASFAACFLEGYCWTRTGERQAARMRARYLKAVLRQEVAYFDLHVTSTSEVITSVSNDSLVIQDVLSEKVPNFLMNASMFIGSYIVAFALLWRLAIVGFPFVVLLVIPGFMYGRTLMGLARKMREEYNQAGTIAEQAISSIRTVYSFAGESKTIAAFSNALEGSVKLGLKQGLAKGLAIGSNGVVFAIWSFMSFYGSRMVMYHGAKGGTVFAVGASLALGGLALGAGLSNVKYFSEASVAGERIMEMIKRVPKIDSENIEGEILEKVLGEVEFNHVEFVYPSRPESVVLNDFCLKVPSGKTVALVGGSGSGKSTVVSLLQRFYDPIGGEILLDGVAIHKLQLKWLRSQMGLVSQEPALFATSIMENILFGREDATYEEIVDAAKASNAHNFISMLPQGYDTQVGERGVQMSGGQKQRIAIARAIIKMPKILLLDEATSALDSESERVVQEALDKAAVGRTTIIIAHRLSTIQNADIIAVVQNGKIMETGSHESLMQNENSLYTSLVRLQQTRNDQTDDTPSIMNRGHMQNTSSRRLVSRSSSSFNSMTHGGDDILNYNNVVEDIVNNVVVVDDRNNHNSINNTKKEKVKVPSFRRLLAMNVPEWKQACLGCINAVLFGAIQPVYSFALGSVVSVYFLEDHDEIKKQIRIYVFCFLGLAVISLVVNVLQHYSFAYMGEYLTKRVRERMFSKILTFEVGWFDEDRNSTGSVCSRLAKDANVVRSLVGDRLALVVQTISAVVIAFTMGLIIAWRLAIVMIAVQPVIICCFYTRRVLLKNMSSKAIKAQDECSKIAAEAVSNLRTINAFSSQDRILKMLEKAQQGPSHESIRQSWFAGIGLACSQSLNFCTWALDFWYGGKLVSQGYISAKALFETFMILVSTGRVIADAGSMTNDLAKGSDAVGSVFAVLDRYTKIEPDDLESYQAEKLIGKIELRDVYFSYPARPNVMIFQGFSIKIDAGKSTALVGESGSGKSTIIGLIERFYDPLKGIVTIDGRDIKTYNLRSLRKHIALVSQEPTLFSGTIRENIAYGAYDDTVDESEIIEASKASNAHDFISSLKDGYDTLCGDRGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKLVQDALERVMVGRTSVVVAHRLSTIQNCDLIAVLDKGSVVEKGTHSSLLSKGPSGAYYSLVSLQRRPTNITIDSSHEIN* 1277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0220 1276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1015 1261 IPR027417 -
Mtr6g0220 1276 Pfam ABC transporter 1039 1189 IPR003439 GO:0005524
Mtr6g0220 1276 Pfam ABC transporter 379 528 IPR003439 GO:0005524
Mtr6g0220 1276 SMART AAA_5 388 580 IPR003593 -
Mtr6g0220 1276 SMART AAA_5 1047 1241 IPR003593 -
Mtr6g0220 1276 CDD ABC_MTABC3_MDL1_MDL2 361 599 - -
Mtr6g0220 1276 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 37 326 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0220 1276 CDD ABC_6TM_Pgp_ABCB1_D1_like 36 334 - -
Mtr6g0220 1276 SUPERFAMILY ABC transporter transmembrane region 34 342 IPR036640 GO:0005524|GO:0016021
Mtr6g0220 1276 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 361 597 IPR003439 GO:0005524
Mtr6g0220 1276 CDD ABC_6TM_Pgp_ABCB1_D2_like 687 1003 - -
Mtr6g0220 1276 CDD ABC_MTABC3_MDL1_MDL2 1020 1261 - -
Mtr6g0220 1276 ProSitePatterns ABC transporters family signature. 500 514 IPR017871 GO:0005524
Mtr6g0220 1276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 599 IPR027417 -
Mtr6g0220 1276 ProSitePatterns ABC transporters family signature. 1161 1175 IPR017871 GO:0005524
Mtr6g0220 1276 MobiDBLite consensus disorder prediction 604 627 - -
Mtr6g0220 1276 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1020 1258 IPR003439 GO:0005524
Mtr6g0220 1276 Pfam ABC transporter transmembrane region 37 302 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0220 1276 Pfam ABC transporter transmembrane region 699 967 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0220 1276 Gene3D - 359 626 IPR027417 -
Mtr6g0220 1276 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 704 985 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0220 1276 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 21 1266 - -
Mtr6g0220 1276 SUPERFAMILY ABC transporter transmembrane region 679 1004 IPR036640 GO:0005524|GO:0016021
Mtr6g0220 1276 Gene3D ABC transporter type 1, transmembrane domain 85 994 IPR036640 GO:0005524|GO:0016021
Mtr6g0220 1276 Gene3D - 1010 1268 IPR027417 -
Mtr6g0220 1276 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 21 1266 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0220 Mtr-Chr6 2597252 2605821 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0220 2 1262 Calmodulin-binding Proteins AT2G36910 44.166 0.0 1056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0220 6 2597252 2605821 Mtr6g0220 6 2597252 2605821 ECH