Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0218 ATGGGTGGTAGTGATCAGAAAAATGTTTCCATTAATGTTAAGAAGAAAAAGAAAAATGGTTCTTTTAAGTCCATTTTCATGCATGCTGATGTTCTTGATTGTTTCTTAATGGCTTTTGGTTTGTTTGGAGCCATTGGTGATGGAATAATGACTCCTTTGCTTTTGTTTATCTCAAGCAAACTTATGAACTCTATTGGTACTATTTCTGGCACATCAAGCAACAATTTTGTCCATAACATCTATGAGAATGCTATTGTTTTGTTATATTTGGCATGTGCTTCTTTTGTTGCTTGCTTCCTAGAGGGTTATTGTTGGACAAGAACAGGTGAAAGACAAGCTGCAAGAATGAGAGTTAGGTACTTAAAAGCAGTTCTAAGACAAGAAGTATCATACTTTGATTTGCATATTACAAGCACATCAGAAGTCATCACCAGTGTCTCTAACGACAGTCTGGTAATTCAAGACGTTCTTAGTGAAAAGGTTCCAAATTTGTTGATGAATGCATCTATGTTCATTGGAAGCTATATAGTAGCATTTACATTATTATGGAGATTGGCAATTGTAGGGTTCCCTTTTATTGTTCTACTTGTGATTCCTGGTTTCATGTATCGAAGGACATCGATGGGATTGGCTAGAAAAATTAGTGAAGAGTATAATCGAGCTGGTACAATAGCAGAACAAGCAATATCTTCAATCAGAACTGTTTATTCCTTTACAGGAGAAAACAAAACCATAGCTGCTTTCTCAAATGCTTTGGAAGGATCAGTGAAGTTGGGATTGAAACAAGGCTTAGCTAAAGGTTTTGCCATAGGAAGCAATGGTGTTGTTTTTGCAATAGCTTCTTTTATGACTTATTATGGTAGCAGAATGGTCATGTATCATGGTGCTAAAGGTGGTACTGTTTATAATGTTGGAGCTTCCTTAGCACTTGGTGGATTGACTTTAGGAGCTGTTTTATCAAATGTGAAGTACTTTTCAGAAGCAAGTGTAGCAGGAGAAAGAATAATGGATGTGATAAATAGAGTTCCAAAGATTGATTCTGAAAACATGGAAGGAGAGATTCTAGAGAAAGTTTTAGGAGAAGTTGAATTTAACCATGTTGAATTTGTGTATCCATCAAGACCAGAAAGTGTGATCTTAAATGATTTTTGCTTGAAGGTTCCATCAGGAAAAACAGTGGCATTAGTAGGAGAAAGTGGTTCAGGAAAATCAACAGTTGTATCACTTTTGCAAAGATTTTATGATCCAATTTGTGGAGAGATTCTTCTTGATGGAGTTGCCATTCATAAGTTGCAACTTCAGTGGCTTAGGTCTCAAATGGGTTTAGTAAGTCAAGAACCTGCTTTGTTTGCAACAAGCATTAAGGAGAATATACTTTTTGGAAGAGAGGATGCTACATATGAAGATGTTGTAGATGCTGCTAAAGTTTCCAATGCTCATAATTTCATTTCATTGTTGCCACAAGGATATGATACGCAGGTTGGGGAGAGAGGAGTTCAAATGTCAGGGGGGCAAAAACAAAGGATTGCCATTGCAAGAGCCATAATAAAAATGCCTAAAATTTTATTGTTGGACGAAGCGACAAGTGCACTTGATTCTGAATCCGAACGAATTGTCCAAGACGCTCTAGACAAAGTCGCAGTTGGACGCACAACCATCATCATCGCTCATCGCCTATCCACCATCCAAAATGCTGACATCATTGCAGTGTTTCAAAATGGCAAGATAATGGAAACAGGAACTCATGAAAGCCTCGCGCAAGATGAAAATTCTCTTTACACCTCTCTCGTTCGTCTCCAACAAACTAGAAATGACCAAAATGAGGACCCTGCATCTATCATGAACAGAGGTCACATGCAAAACACGAGTAGTCGTAGACTCGTGAGTCGTTCTAGCTCTTTCAACTCAATGACACATGGTGGTGATGATATCAATAATTTTGTTGACGATATTGTTAATAATGTAGTTATAGCTGATGATCATAATAATAATGATGATAAAAATAATAAGAAAAAAGAGAAGGTCAAGGTTTCTTCGTTTCAAAGGTTGTTGGCAATGAATGTGCCAGAGTGGAAGCAAGCATGTTTGGGTTGTATAAATGCGGTTTTATTCGGTGCGATTCGACCTGTATATTCGTTCGCAATGGGGTCAGTTATATCAGTTTATTTTTTGGAAGACCATGATGAGATCAAGAGGCAAATTAGGATCTATGCATTTTGTTTTCTAGGGTTGGCTGTTATCTCAATGGTTGTTAATGTGCTTCAACATTATAGCTTTGCTTACATGGGAGAATACTTGACTAAGAGGGTTAGAGAACGAATGTTTTCCAAGATACTCACATTTGAAGTTGGTTGGTTTGATGAAGATCAAAATTCTACAGGTGTTGTTTGCTCTAGACTTGCCAAAGAAGCTAATATGGTAAGATCTTTGGTGAGTGATAGATTGGCGCTAGTGGTACAAACAATATCAGCAGTGGTAATATCATTCACAATGGGTTTAATCATCGCATGGAGACTAGCCATTGTTATGATAGCAGTTCAACCCCTTATCATATGTTGTTTCTACACAAGGCGTGTCCTTCTCAAGAATATGTCAAGCAAAGCCATCAAGGCCCAAGATGAATGTAGTAAAATAGCTTCTGAAGCTGTTACAAATCTTAGAACCATCAATAGTTTTTCATCTCAAGATAGAATCCTCAAAATTCTTGGAAAAGCTCAGCAAGGCCCTAGTCATGAAAGTATTAGACAGTCTTGGTTTGCTGGCATTGGACTTGCATGTTCACAAAGCCTCTTTTTGTGTACCTGGGCTTTGGACTTTTGGTACGGTGGAAAACTTGTGTCACAAGGTTATATTTCGGCAAAAGCATTATTTGAGACTTTTATGATCTTGATAAGTACCGGAAGAGTTATTGCAGATGCCGGTAGCATGACAAATGATCTTGCTAAAGGCTCTAATGCAGTTGGATCGGTTTTCGCAATCCTCGATAGGTATACAACAATCGAGCCTGATGATTTTGAAGGTTACAAAGCCAAAAATTTGATAGGGAAAATTGAACTTCTTGATGTAGATTTTGCATATCCGGGTAGACCTAATGTGATGATCTTTCAAGGGTTCTCAATTAAAATCGACGCTGGAAAATCGACGGCTTTGGTCGGGGAAAGTGGTTCAGGGAAATCAACAATCATAGGACTAATTGAGAGATTCTATGATCCAATTAAAGGGATAGTGACAATTGATGGTGAAGATATAAAGTCTTATAATCTAAGGTCGTTAAGGAAACACATTGCACTTGTAAGTCAAGAACCAACACTGTTTGGTGGTACCATAAGGGAAAATATTGCATACGGAGCCTATGATGATAAAGTTGATGAGAGTGAGATTATTCAGGCATCAAAGGCTGCAAATGCTCATGATTTCATATCAAGCTTACAAGATGGTTATGATACATTGTGTGGTGATAGAGGAGTTCAACTTAGTGGTGGTCAAAAACAAAGGATTGCAATAGCTAGAGCTATATTGAAGAATCCAAAGGTGTTACTTTTGGATGAAGCAACAAGTGCACTTGATAGTCAATCAGAGAAATTAGTGCAAGATGCTTTAGAAAGAGTTATGGTTGGAAGGACAAGTGTAGTTGTCGCACATAGGTTGAGTACTATACAAAATTGTGATTTGATTGCTGTTTTGGATAAGGGGATTGTTGTTGAGAAAGGAACACATTCATCTTTGTTGTCTTTGGGACCAAGTGGAGTTTATTACTCTTTAGTAAGTCTACAAAGAAGACCAACCAATACAATTGTTGGTTCTTCACATGAAATCAACTAA 3822 0.3757 MGGSDQKNVSINVKKKKKNGSFKSIFMHADVLDCFLMAFGLFGAIGDGIMTPLLLFISSKLMNSIGTISGTSSNNFVHNIYENAIVLLYLACASFVACFLEGYCWTRTGERQAARMRVRYLKAVLRQEVSYFDLHITSTSEVITSVSNDSLVIQDVLSEKVPNLLMNASMFIGSYIVAFTLLWRLAIVGFPFIVLLVIPGFMYRRTSMGLARKISEEYNRAGTIAEQAISSIRTVYSFTGENKTIAAFSNALEGSVKLGLKQGLAKGFAIGSNGVVFAIASFMTYYGSRMVMYHGAKGGTVYNVGASLALGGLTLGAVLSNVKYFSEASVAGERIMDVINRVPKIDSENMEGEILEKVLGEVEFNHVEFVYPSRPESVILNDFCLKVPSGKTVALVGESGSGKSTVVSLLQRFYDPICGEILLDGVAIHKLQLQWLRSQMGLVSQEPALFATSIKENILFGREDATYEDVVDAAKVSNAHNFISLLPQGYDTQVGERGVQMSGGQKQRIAIARAIIKMPKILLLDEATSALDSESERIVQDALDKVAVGRTTIIIAHRLSTIQNADIIAVFQNGKIMETGTHESLAQDENSLYTSLVRLQQTRNDQNEDPASIMNRGHMQNTSSRRLVSRSSSFNSMTHGGDDINNFVDDIVNNVVIADDHNNNDDKNNKKKEKVKVSSFQRLLAMNVPEWKQACLGCINAVLFGAIRPVYSFAMGSVISVYFLEDHDEIKRQIRIYAFCFLGLAVISMVVNVLQHYSFAYMGEYLTKRVRERMFSKILTFEVGWFDEDQNSTGVVCSRLAKEANMVRSLVSDRLALVVQTISAVVISFTMGLIIAWRLAIVMIAVQPLIICCFYTRRVLLKNMSSKAIKAQDECSKIASEAVTNLRTINSFSSQDRILKILGKAQQGPSHESIRQSWFAGIGLACSQSLFLCTWALDFWYGGKLVSQGYISAKALFETFMILISTGRVIADAGSMTNDLAKGSNAVGSVFAILDRYTTIEPDDFEGYKAKNLIGKIELLDVDFAYPGRPNVMIFQGFSIKIDAGKSTALVGESGSGKSTIIGLIERFYDPIKGIVTIDGEDIKSYNLRSLRKHIALVSQEPTLFGGTIRENIAYGAYDDKVDESEIIQASKAANAHDFISSLQDGYDTLCGDRGVQLSGGQKQRIAIARAILKNPKVLLLDEATSALDSQSEKLVQDALERVMVGRTSVVVAHRLSTIQNCDLIAVLDKGIVVEKGTHSSLLSLGPSGVYYSLVSLQRRPTNTIVGSSHEIN* 1274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0218 1273 Gene3D - 352 601 IPR027417 -
Mtr6g0218 1273 CDD ABC_6TM_Pgp_ABCB1_D2_like 684 1000 - -
Mtr6g0218 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 600 IPR027417 -
Mtr6g0218 1273 CDD ABC_MTABC3_MDL1_MDL2 1017 1258 - -
Mtr6g0218 1273 ProSitePatterns ABC transporters family signature. 1158 1172 IPR017871 GO:0005524
Mtr6g0218 1273 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
Mtr6g0218 1273 Pfam ABC transporter 1036 1186 IPR003439 GO:0005524
Mtr6g0218 1273 Pfam ABC transporter 380 529 IPR003439 GO:0005524
Mtr6g0218 1273 SUPERFAMILY ABC transporter transmembrane region 682 996 IPR036640 GO:0005524|GO:0016021
Mtr6g0218 1273 Gene3D - 1007 1265 IPR027417 -
Mtr6g0218 1273 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1017 1255 IPR003439 GO:0005524
Mtr6g0218 1273 MobiDBLite consensus disorder prediction 607 627 - -
Mtr6g0218 1273 CDD ABC_MTABC3_MDL1_MDL2 362 600 - -
Mtr6g0218 1273 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 327 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0218 1273 SUPERFAMILY ABC transporter transmembrane region 33 346 IPR036640 GO:0005524|GO:0016021
Mtr6g0218 1273 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 335 - -
Mtr6g0218 1273 Pfam ABC transporter transmembrane region 38 303 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0218 1273 Pfam ABC transporter transmembrane region 696 965 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0218 1273 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524
Mtr6g0218 1273 Gene3D ABC transporter type 1, transmembrane domain 25 626 IPR036640 GO:0005524|GO:0016021
Mtr6g0218 1273 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 701 982 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0218 1273 SMART AAA_5 1044 1238 IPR003593 -
Mtr6g0218 1273 SMART AAA_5 389 581 IPR003593 -
Mtr6g0218 1273 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 22 1263 - -
Mtr6g0218 1273 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 22 1263 IPR039421 -
Mtr6g0218 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1011 1258 IPR027417 -
Mtr6g0218 1273 Gene3D ABC transporter type 1, transmembrane domain 669 996 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0218 Mtr-Chr6 2565491 2573230 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0218 696 1271 Calmodulin-binding Proteins AT2G36910 37.370 8.39e-114 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0218 K05658 - gmx:100807709 1925.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0218 6 2565491 2573230 Mtr6g0218 6 2565491 2573230 ECH