Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0217 ATGAATACTTTTTGGTTGTGGTGGCAAATGTGTGGTGAAAAAAATGTTTCCATTAATGATAAGAAAAAGAAGAATGGTTCTTTGAAGTCCATTTTCATGCATGCTGATGTTCTTGATTGGTTTTTCATGGTTTTTGGTTTGATTGGTGCCATTGGTGATGGACTAATGACCCCTTTGCTTCTGCTTTTCTTAAGCAGACTTATGAACTCTATTGGTTCTAATTCTGGCCCATCAAAGAACTATTTTGTCCGTAGCATCAATGAGAATGCTGTTGTTTTGTTATATTTGGCATGTGCCTCTTGTGTTGCTTGCTTCCTAGAGGGTTATTGTTGGACAAGAACAGGTGAAAGACAAGCTGCAAGAATGAGAGTTAGGTACTTAAAAGCAGTTCTAAGACAAGAAGTAGCATACTTTGATTTGCATGTTACAAGCACATCAGAAGTCATCACAAGTGTCTCAAACGACATCCTAGTAATTCAAGATGTTCTTAGTGAAAAGGTTCCGAATTTTGTGATGAATACATCTATTTTCTTTGGAGGATACATAGTGGCATTTGCATTGTTATGGAGATTGGCAATTGTTGGGTTCCCTTTTGTGGTACTACTTGTGATTCCTGGTTTCATGTATGGAAGAACTATGATGGGATTGGCTAGAAAAATGAGAGAAGAGTACAATAAAGCAGGTACAATAGCAGAACAAGCAATATCTTCAATTAGAACTGTTTATTCCTTTGCAGGAGAAAGCAAAACCATAGCTGCTTTCTCTAATGCTTTGGAAGGATCAGTGAAATTGGGATTGAAACAAGGCTTAGCTAAAGGCTTAGGCATAGGAAGCAATGGTCTTCTTTTTGCTGTATGGTCTTTGATGGCCTATTATGGTAGCAGAATGGTCATGTATCATGGTGCTAAAGGTGGTACTGTATTTGCTGTTGGATATTCAATAGCACTTGGTGGATCGGCTTTAGGAGCTGGTCTATCAAATGTGAAGTACTTCTCAGAGGCAAGTGTTGCAGGAGAAAGAATAATGGAAATGATAAATAGAGTTCCAAAAATAGATTCTAAAAACATGGAAGGTGAAATTCTAGAGAAAGTGTCAGGGAAAGTTGAATTCAACCATGTTGAATTTGTGTATCCATCAAGACCAGAAAGTGTGGTCCTAAATGATTTTTGTTTAAAGGTTCCATCAGGGAAAACGGTTGCATTAGTAGGAGGAAGTGGTTCAGGAAAATCAACAGTTGTATCACTTTTACAAAGATTTTATGATCCAATTGGTGGAGAGATTCTTCTTGATGGAGTTGCTATTCATAAGTTGCAACTTAAGTGGCTTAGGTCACAAATGGGTTTAGTAAGTCAAGAACCTGCTTTGTTTGCAACAAGCATTAAGGAGAATATACTTTTTGGAAGAGAGGATGCTACATATGAAGAAATTGTGGATGCTGCTAAAGCTTCCAATGCTCATAATTTCATTTCATTGTTGCCACAAGGATATGATACTCAGGTTGGGGAGAGAGGAGTTCAAATGTCTGGGGGGCAAAAGCAAAGGATTTCCATTGCAAGAGCTATCATAAAAATGCCAAAAATTCTTTTGCTAGATGAAGCAACAAGTGCACTAGATTCTGAATCCGAAAGAGTTGTCCAAGAAGCTTTAGACAAAGCCACCGTTGGACGCACCACCATCATCATCGCTCACCGCTTATCCACCATTCAAAATGCAGACATCATTGCGGTTGTTCAAAATGGTATGATCGCGGAAACAGGATCTCATGAAAGCCTCATGCAAAATGACAATTCTCTTTACGCCTCCCTTGTTCGTCTCCAGCAAACAAAAAAGGACCAAACCGATGACACCCCATCTATCATGAATAGAGATCACATGCAAAACATGAGTGGTTGTAGACTCGTGAGTCCATCTAACTCTTTCAACTCAACAACGCGAGGCAGTGATGATGTTTTTAATTATAACAATGTCGTTGAAGATGTTGTTACTAAATTTGTAGTTGATGATGATAATAGTAAAAACAAGAAGGTTGAGGTTCCTTCCTTTCAAAGGTTGTTGGCAATGAATGGACCAGAGTGGAAGCAAACATGCTTGGGCTGTATAAATGCGATTTTAGTCGGTGCAATTCAACCTGTGTTTTCATTTGGATTGGGGTCGGTTATATCGGTTTATTTTTTGGAGAACCATGATGAGATCAAGAAGCAAATTAGGATTTATGCACTTTGTTTTCTAGGGTTGGCTGTTATCTCAATGGTTGTTAATGTGCTTCAACATTATAGCTTTGCTTACATGGGAGAGTACTTGACTAAGAGGATTAGAGAAAAGATGTTTTCTAAGATACTCACATTTGAAGTTGGTTGGTTTGATGAAGATCAAAATTCTACAGGTTCTGTTTGCTCTAGACTTGCCAAAGAAGCCAATGTGGTAAGATCTTTGGTGGGTGATAGATTGTCTCTAGTGATACAAACAATTTCAGCAGTGGTAATAGCATTCACAATGGGACTACTTATTGCATGGAGATTAGCCATTGTTATGATAGCAGTTCAACCAATTATCATATATTGTTTCTACACAAGGTTTGTCCTTCTTAAGAATATGTCAAACAAAGCCGTCAAGGCCCAAGATGAATGTAGCAAAATAGCTGCTGAAGCTGTTTCAAATCTAAGAACCATCAATGCTTTTTCATCTCAAGAAATAATTCTCAAAATGCTTGAAAAATCTCAACAAGGCCCAAGTCATGAAAGTATTAGACAATCTTGGTATGCTGGCATTGGACTTGCATGTGCACAAAGTATCAAGTTATGTAGTTATGCTTTGAGCTTTTGGTATGGTGGGAAACTTGTGTTGCAAGGTTATATCTCAGCCAAGGCGTTATTTAAGACTTTTTTAATTTTGGTAAGTACCGGAAAAGTTATCGCTGATGCTGGTAGCATGACGAATGATCTTGCTAAAGGTTCTGATGCCATTGCGTCGGTTTTCACAATCCTTGATAGGTATACGAAAATCAAGCCTGATGAAATAGAAGGTCACAAAGCTATAAAGTTAATAGGAAAAATTGAATTTTGTGATGTATATTTTGCATATCCGTCTAGACCTAATGTGATGATTTTTCAAGGATTTTCGATTAAATTTGATGCTGGAAAATCGACAGCTCTGGTAGGGAAAAGTGGTTCTGGGAAATCAACGATCATAGGACTAATTGAGAGGTTCTATGATCCACTTGAAGGGATAGTGACAATTGATGGCAGAGACATAAAAACTTATAATCTAAGGTCATTAAGGAAACACATTGCACTTGTGAGTCAAGAACCAACATTGTTTGGTGGTACCATAAAAGAAAATATTGCATATGGATCATATGGTGATCAGGTTGATGAGAGTGAAATTATAGAGGCATCAAAGGCTGCAAATGCTCATGATTTCATATCAAGCTTAAAAGATGGATATGACACATTGTGTGGTGACAGAGGAGTTCAACTTAGTGGTGGTCAAAAACAAAGAATTGCAATAGCTAGAGCTATATTAAAGAATCCAGATGTGTTGCTTTTGGATGAAGCAACAAGTGCACTTGATAGTCAATCTGAGAAATTAGTCCAAGACACTTTAGAAAAGGTCATGGTTGGAAGGACAAGCGTGGTTGTAGCACATAGGTTGAGTACTATCCAAAACTGTGATTTGATTGCTGTTTTGGATAAGGGAAGTGTTGTTGAGAATGGAACACATTCATCCTTGTTGTCTAAAGGGCCAAGTGGAGCATATTACTCTTTGATAAGTCTACAAAAAAGACCAACCAACATAATTGTTGATTCTCCACATGAAATTAAATAA 3825 0.377 MNTFWLWWQMCGEKNVSINDKKKKNGSLKSIFMHADVLDWFFMVFGLIGAIGDGLMTPLLLLFLSRLMNSIGSNSGPSKNYFVRSINENAVVLLYLACASCVACFLEGYCWTRTGERQAARMRVRYLKAVLRQEVAYFDLHVTSTSEVITSVSNDILVIQDVLSEKVPNFVMNTSIFFGGYIVAFALLWRLAIVGFPFVVLLVIPGFMYGRTMMGLARKMREEYNKAGTIAEQAISSIRTVYSFAGESKTIAAFSNALEGSVKLGLKQGLAKGLGIGSNGLLFAVWSLMAYYGSRMVMYHGAKGGTVFAVGYSIALGGSALGAGLSNVKYFSEASVAGERIMEMINRVPKIDSKNMEGEILEKVSGKVEFNHVEFVYPSRPESVVLNDFCLKVPSGKTVALVGGSGSGKSTVVSLLQRFYDPIGGEILLDGVAIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGREDATYEEIVDAAKASNAHNFISLLPQGYDTQVGERGVQMSGGQKQRISIARAIIKMPKILLLDEATSALDSESERVVQEALDKATVGRTTIIIAHRLSTIQNADIIAVVQNGMIAETGSHESLMQNDNSLYASLVRLQQTKKDQTDDTPSIMNRDHMQNMSGCRLVSPSNSFNSTTRGSDDVFNYNNVVEDVVTKFVVDDDNSKNKKVEVPSFQRLLAMNGPEWKQTCLGCINAILVGAIQPVFSFGLGSVISVYFLENHDEIKKQIRIYALCFLGLAVISMVVNVLQHYSFAYMGEYLTKRIREKMFSKILTFEVGWFDEDQNSTGSVCSRLAKEANVVRSLVGDRLSLVIQTISAVVIAFTMGLLIAWRLAIVMIAVQPIIIYCFYTRFVLLKNMSNKAVKAQDECSKIAAEAVSNLRTINAFSSQEIILKMLEKSQQGPSHESIRQSWYAGIGLACAQSIKLCSYALSFWYGGKLVLQGYISAKALFKTFLILVSTGKVIADAGSMTNDLAKGSDAIASVFTILDRYTKIKPDEIEGHKAIKLIGKIEFCDVYFAYPSRPNVMIFQGFSIKFDAGKSTALVGKSGSGKSTIIGLIERFYDPLEGIVTIDGRDIKTYNLRSLRKHIALVSQEPTLFGGTIKENIAYGSYGDQVDESEIIEASKAANAHDFISSLKDGYDTLCGDRGVQLSGGQKQRIAIARAILKNPDVLLLDEATSALDSQSEKLVQDTLEKVMVGRTSVVVAHRLSTIQNCDLIAVLDKGSVVENGTHSSLLSKGPSGAYYSLISLQKRPTNIIVDSPHEIK* 1275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0217 1274 SUPERFAMILY ABC transporter transmembrane region 683 996 IPR036640 GO:0005524|GO:0016021
Mtr6g0217 1274 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1018 1256 IPR003439 GO:0005524
Mtr6g0217 1274 Coils Coil 862 882 - -
Mtr6g0217 1274 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 28 1264 IPR039421 -
Mtr6g0217 1274 ProSitePatterns ABC transporters family signature. 1159 1173 IPR017871 GO:0005524
Mtr6g0217 1274 SMART AAA_5 395 587 IPR003593 -
Mtr6g0217 1274 SMART AAA_5 1045 1239 IPR003593 -
Mtr6g0217 1274 Pfam ABC transporter 1037 1187 IPR003439 GO:0005524
Mtr6g0217 1274 Pfam ABC transporter 386 535 IPR003439 GO:0005524
Mtr6g0217 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 606 IPR027417 -
Mtr6g0217 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1012 1259 IPR027417 -
Mtr6g0217 1274 ProSitePatterns ABC transporters family signature. 507 521 IPR017871 GO:0005524
Mtr6g0217 1274 Gene3D ABC transporter type 1, transmembrane domain 31 628 IPR036640 GO:0005524|GO:0016021
Mtr6g0217 1274 Gene3D ABC transporter type 1, transmembrane domain 658 1006 IPR036640 GO:0005524|GO:0016021
Mtr6g0217 1274 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 44 333 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0217 1274 Pfam ABC transporter transmembrane region 44 309 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0217 1274 Pfam ABC transporter transmembrane region 696 966 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0217 1274 Gene3D - 1008 1265 IPR027417 -
Mtr6g0217 1274 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 368 604 IPR003439 GO:0005524
Mtr6g0217 1274 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 28 1264 - -
Mtr6g0217 1274 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 702 983 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0217 1274 CDD ABC_6TM_Pgp_ABCB1_D2_like 685 1001 - -
Mtr6g0217 1274 CDD ABC_MTABC3_MDL1_MDL2 1018 1259 - -
Mtr6g0217 1274 Gene3D - 358 607 IPR027417 -
Mtr6g0217 1274 CDD ABC_MTABC3_MDL1_MDL2 368 606 - -
Mtr6g0217 1274 CDD ABC_6TM_Pgp_ABCB1_D1_like 43 341 - -
Mtr6g0217 1274 SUPERFAMILY ABC transporter transmembrane region 38 349 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0217 Mtr-Chr6 2540983 2550112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0217 27 1260 Calmodulin-binding Proteins AT2G36910 44.382 0.0 1047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0217 6 2540983 2550112 Mtr6g0217 6 2540983 2550112 ECH