Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0216 ATGGGTGGTGGTGATCAGAAAAATGTTTCCATTAATGTTAAGAAAAAGAAAAATGGTTCTTTTAAGTCAATTTTCATGCATGCAGATGTTCTAGATTGGTTTTTCATGGTTTTTGGTTTGATTGGTTCCATTGGTGATGGCATATCAGTTCCTTTGTTGTTGTTTATTGCAGGCAGACTTATGAACTCTATTGGTGGTGCTTCTGGCACATCAAACAACAATTTTGTTCATGACATCAATAAGAATGCTGTTCTTTTTTTATATCTGGCTTGTGCCTCTTTCGTTGCTTGCTTCCTAGAGGGTTATTGTTGGACAAGAACAGATGAAAGACAAGCTGCAAGAATGAGAGTTAGGTACTTAAAAGCAGTTTTAAGACAAGAAGTAGCATACTTTGATTTGCATGTTACAAGCACATCAGAAGTCATCACCAGTGTCTCCAATGATAGCCTGGTAATTCAAGATGTTATTAGCGAAAAGGTTCCAAATTTTTTGATGAATGTGTCTATGTTCCTTGGAAGCTACATAGCAGCATTTGCATCGTTATGGAGATTGGCAATTGTTGGGTTCCCTTTTTTGGTATTACTAGTGATTCCTGGTTTCATGTATGGAAGGACTTCGATGGGATTGGCTAGAAAAATTAGGGAAGAGTACAATAAAGCAGGTACAATAGCAGAACAAGCAATATCTTCAATTAGAACTGTTTATTCCTTTACAGGAGAAAACAAAACCATAGCTGCTTTCTCTGATGCTTTGGAAGGACCACTGAAGTTGGGATTGAAACAAGGCTTAGCTAAAGGCTTAGGCATAGGAAGCAATGGTCTTGTTTTTGCCGTATGGTCGTTGATGTCCTATTATGGTAGCAGAATGGTCATGTATCATGGTGCTAAAGGTGGTACCGTTTATTCAGTTGGAGTTTCAATCGCAATTGGTGGATTGGCTTTCGGAGCTGGTTTATCAAATGTGAAGTACTTCTCAGAAGCAAGTGCAGCAGGAGAAAGAATAATGGAAATGATAAAACAAATTCCAAAGATTGATTCTGAAAATATGGAAGGTGAAATTCTAGAGAAAGTCTTGGGGGAAGTTGAGTTCAACAATGTTGAATTTGTGTATCCATCAAGACCAGAAAGTGTGGTCCTAAAGTGTGGTCCATCAGGGAAAACGGTTGCATTAGTAGGAGGAAGTGGTTCAGGAAAATCAACAGTTGTATCACTTTTACAAAGATTTTATGATCCAATTGGTGGAGAGATTCTTCTTGATGGAGTTGCTATTCATAAGTTGCAACTTAAGTGGCTTAGGTCACAAATGGGTTTAGTAAGTCAAGAACCTGCTTTGTTTGCAACAAGCATTAAGGAGAATATACTTTTTGGAAGAGAGGATGCTACATATGAAGAAATTGTGAATGCTGCTAAAACTTCTAATGCTCATAATTTCATTTCATTGTTGCCACAAGTATATGATACTCAGGTTGGGGAGAGGGGAGTACAAATGTCAGGGGGACAAAAGCAAAGAATTGCAATTGCAAGAGCCATCATAAAAATGCCAAAAATTCTATTGTTAGACGAAGCAACAAGTGCACTCGATTCTGAATCCGAACGAGTCGTCCAAGAAGCTCTAGACAAAGCTTCAGTTGGACGCACCACCATCATCATCGCTCACCGATTATCTACCATCCAAAATGCAGAAGTCCTTTTAGAGGATGATGGTGATGATTTAGATGATAGCAACAAAAAGCATTATCCACACCATTTGCCATGCCTAAAAAGATGAGTAATTTTAAGTGGGTGTTAGGAGCCAGATTTGGTACCAAAGATGAGTTCAATAAAGCAATTACCAACTATGATATCTACAATATGACTTGTTTGAAACGATTCAAAAACTAAAAGGACTTGTTTGAGACCTTTAAAACTTAAAGACCACTTTGGGAAAAATGAAAAACTTAAAGGACCTTTAGATGCATTTGACCTAGAATATATTTGGTAGTAAAGTTTGTTTACATATAGATAACAGTAATGTGATTTTTAATTAAATTGTTAGCTCATGATATATTTAAGTAATGGAGCTTGTATAAGGTATCACCAATTTAATTATCTTTAATTGTAATATGCTTTCAATTTTGTACTTGTGTATAAAATTTACATAAGGGTGCCCAATGTATGTGGACTCATTTGGCAATAATTGTTGAGCTTGTGTATAAAACATATTTTTCATGTTGGATTAGTCCCATAGCCGACTCAAAGGATGTTAATTATGGTGACTTCCATTTTCTTTGTTAATTGCATAAAACATATGTTTATGTTTTCCATTGCAAAAATATCACATTATTATAAGTTTTCAAATATTTATAAAAATATTAGAATACTTTTCAATGTTTTCTATACTAAAATCTGCAAAATAATACCTTGTGCATTGTGATTCTCTATAACATTTTCTTTATTCCAATTAATGACATACGTAAGATCTTTGGTGGGTGATCGATTGGCATTAGCAGTACAAACAATTTCAGCAGTGATAATAGCATTCACAATGGGCCTAATCATTGCATGGAGACTAACCATTGTTATGATAGTAGTGCAACCAGTTATTATATGTTGTTTCTATACAAGGCGTGTCCTTCTTAAGAACATGTTAAGCAAAGCCATCAAGGCTCAAGATGAGTGTAGCAAAATAGCTGCTGAAGCTGTTTCAAATCTAAGAACCATCAATGCTTTTTCATCTCAAGATAGAATTCTCAAAATGCTAGAAAAAGCACAAGGACCAAGCCATGAAAGTATTAGACAGTCCTGGTTTGCAGGTATTGGACTTGCATGTTCACAAAGTCTCAATTTTTGTAATTGGGCTTTGGACTTTTGGTATGGTGGAAAACTTGTGTCGCAAGGTTATATCTCGGCTAAGGCGTTATTCGAGACTTTTATGATTTTGGTAAGTACAGGAAGAGTTATTGCTGATGCCGGTAGCTTGACGAATGATCTTGCTAAAGGCTCTAATGCGGTTGGATCGGTTTTCACAATCCTCGATAGGTATACAAAAATCGAGCCCGATGATTTAGAAGGTTACAGAGCTGAAAAATTAATAGGAAAAATTGAACTTCGTGATGTATATTTTGCATATCCAGGTAGACCTAATGTTACAATTTTTCAAGGGTTCTCGATTAAAATTGATGCAGGAAAATCGACGGCTTTGGTAGGGGAAAGTGGTTCTGGAAAATCGACAATTATAGGACTAATTGAGAGATTCTATGATCCATTTAAAGGGATAGTGACAATTGACGGTAGAGACATAAAGACATATAATCTACGATCATTAAGGAAACATATTGCACTTGTGAGTCAAGAACCAACATTGTTTGGTGGTACCATAAAAGAAAATATTGTATATGGAGCATATGATGATAAAGTTGATGAGAGTGAGATTATAGAGGCATCAAAGGCTGCAAATGCTCACGATTTCATATCAAGCTTAAAAGATGGTTATGATACACTGTGTGGTGATAGAGGAGTTCAACTTAGTGGTGGTCAAAAACAAAGAATTGCAATAGCTAGAGCTATATTGAAGAATCCAGAGGTGTTGCTTTTGGATGAAGCAACAAGTGCACTTGATAGTCAATCAGAGAAATTAGTCCAAGATACTTTAGAAAGGGTTATGGTTGGAAGGACAAGTGTGGTTGTGGCACATAGGTTGAGTACTATACAAAATTGTGATTTGATTGCTGTCTTGGATAAGGGAATTGTTGTTGAGAAAGGAACACATTCGTCTTTGTTATCTTTGGGACCAAGTGGAGTTTATTACTCTTTGGTAAGTCTACAAAGAAGACTATAA 3816 0.3606 MGGGDQKNVSINVKKKKNGSFKSIFMHADVLDWFFMVFGLIGSIGDGISVPLLLFIAGRLMNSIGGASGTSNNNFVHDINKNAVLFLYLACASFVACFLEGYCWTRTDERQAARMRVRYLKAVLRQEVAYFDLHVTSTSEVITSVSNDSLVIQDVISEKVPNFLMNVSMFLGSYIAAFASLWRLAIVGFPFLVLLVIPGFMYGRTSMGLARKIREEYNKAGTIAEQAISSIRTVYSFTGENKTIAAFSDALEGPLKLGLKQGLAKGLGIGSNGLVFAVWSLMSYYGSRMVMYHGAKGGTVYSVGVSIAIGGLAFGAGLSNVKYFSEASAAGERIMEMIKQIPKIDSENMEGEILEKVLGEVEFNNVEFVYPSRPESVVLKCGPSGKTVALVGGSGSGKSTVVSLLQRFYDPIGGEILLDGVAIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGREDATYEEIVNAAKTSNAHNFISLLPQVYDTQVGERGVQMSGGQKQRIAIARAIIKMPKILLLDEATSALDSESERVVQEALDKASVGRTTIIIAHRLSTIQNAEVLLEDDGDDLDDSNKKHYPHHLPCLKR*VILSGC*EPDLVPKMSSIKQLPTMISTI*LV*NDSKTKRTCLRPLKLKDHFGKNEKLKGPLDAFDLEYIW**SLFTYR*Q*CDF*LNC*LMIYLSNGACIRYHQFNYL*L*YAFNFVLVYKIYIRVPNVCGLIWQ*LLSLCIKHIFHVGLVP*PTQRMLIMVTSIFFVNCIKHMFMFSIAKISHYYKFSNIYKNIRILFNVFYTKICKIIPCAL*FSITFSLFQLMTYVRSLVGDRLALAVQTISAVIIAFTMGLIIAWRLTIVMIVVQPVIICCFYTRRVLLKNMLSKAIKAQDECSKIAAEAVSNLRTINAFSSQDRILKMLEKAQGPSHESIRQSWFAGIGLACSQSLNFCNWALDFWYGGKLVSQGYISAKALFETFMILVSTGRVIADAGSLTNDLAKGSNAVGSVFTILDRYTKIEPDDLEGYRAEKLIGKIELRDVYFAYPGRPNVTIFQGFSIKIDAGKSTALVGESGSGKSTIIGLIERFYDPFKGIVTIDGRDIKTYNLRSLRKHIALVSQEPTLFGGTIKENIVYGAYDDKVDESEIIEASKAANAHDFISSLKDGYDTLCGDRGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKLVQDTLERVMVGRTSVVVAHRLSTIQNCDLIAVLDKGIVVEKGTHSSLLSLGPSGVYYSLVSLQRRL* 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0216 1256 ProSitePatterns ABC transporters family signature. 1153 1167 IPR017871 GO:0005524
Mtr6g0216 1256 CDD ABC_MTABC3_MDL1_MDL2 1012 1253 - -
Mtr6g0216 1256 Pfam ABC transporter 1031 1181 IPR003439 GO:0005524
Mtr6g0216 1256 Gene3D ABC transporter type 1, transmembrane domain 14 372 IPR036640 GO:0005524|GO:0016021
Mtr6g0216 1256 Gene3D ABC transporter type 1, transmembrane domain 691 1000 IPR036640 GO:0005524|GO:0016021
Mtr6g0216 1256 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 37 326 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0216 1256 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1012 1250 IPR003439 GO:0005524
Mtr6g0216 1256 CDD ABC_6TM_Pgp_ABCB1_D2_like 801 995 - -
Mtr6g0216 1256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1007 1253 IPR027417 -
Mtr6g0216 1256 Gene3D - 1002 1255 IPR027417 -
Mtr6g0216 1256 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 797 1254 IPR039421 -
Mtr6g0216 1256 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 797 1254 - -
Mtr6g0216 1256 SUPERFAMILY ABC transporter transmembrane region 758 996 IPR036640 GO:0005524|GO:0016021
Mtr6g0216 1256 SMART AAA_5 384 556 IPR003593 -
Mtr6g0216 1256 SMART AAA_5 1039 1233 IPR003593 -
Mtr6g0216 1256 ProSitePatterns ABC transporters family signature. 496 510 IPR017871 GO:0005524
Mtr6g0216 1256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 564 IPR027417 -
Mtr6g0216 1256 SUPERFAMILY ABC transporter transmembrane region 32 345 IPR036640 GO:0005524|GO:0016021
Mtr6g0216 1256 CDD ABC_MTABC3_MDL1_MDL2 361 562 - -
Mtr6g0216 1256 Pfam ABC transporter transmembrane region 37 301 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0216 1256 Pfam ABC transporter transmembrane region 803 959 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0216 1256 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 361 593 IPR003439 GO:0005524
Mtr6g0216 1256 CDD ABC_6TM_Pgp_ABCB1_D1_like 36 334 - -
Mtr6g0216 1256 Pfam ABC transporter 384 524 IPR003439 GO:0005524
Mtr6g0216 1256 Gene3D - 383 577 IPR027417 -
Mtr6g0216 1256 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 21 564 - -
Mtr6g0216 1256 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 803 977 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0216 1256 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 21 564 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0216 Mtr-Chr6 2521691 2529132 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0216 2 1254 Calmodulin-binding Proteins AT2G36910 39.522 0.0 852
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0216 K05658 - rcu:8280606 1485.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0216 6 2521691 2529132 Mtr6g0216 6 2521691 2529132 ECH