Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0215 ATGGGTGGTGGTGATCAGAAAAATGTTTACATTGTTAAGAAGAAAAAGAAAAATGGTTCTTTTAAGTCAATTTTCATGCATGCAGATGTTCTAGATTGGTTTTTCATGGTTTTTGGTTTGATTGGTTCCATTGGTGATGGCATATCAGTTCCTTTGTTGTTGTTTATTGCAGGCAGACTTATGAACTCTATTGGTAGTGCTTCTGGCGCATCAAGCAACAATTTTGTCCATGACATCAATAAGAATGCTGTTCTTTTTTTATATTTGGCATGTGCCTCTTTTGTTGCTTGCTTCCTAGAGGGTTATTGTTGGACAAGAACAGGTGAAAGACAAGCTGCAAGAATGAGAGTTAGGTACTTAAAAGCAATTCTAAGACAAGATGTAGCTTACTTTGATTTGCATATTACAAGCACATCAGAAGTCATCACCAGTGTCTCCAATGATAGCCTCGTAATTCAAGATGTTATTAGCGAAAAGGTTCCAAATTTTTTGATGAATGCATCTATGTTCCTTGGAAGCTACATAGCAGCATTTGCATTGTTATGGAGATTGGCAATTGTTGGGTTCCCTTTTTTGGTACTACTAGTGATTCCTGGTTTCATGTATGGAAGAATTTCGATGGGATTGGCTAGAAAAATTAGAGAAGAGTACAATAAAGCCGGTACAATAGCACAACAAGCAATATCTTCAATCAGAACTGTTTATTCCTTTGCAGGAGAAAGCAAAACCATAGCTGCTTTCTCTAATGCTTTGGAAGGATCAGTGAAATTGGGATTGAAACAAGGCTTGGCGAAAGGCATAGGCATAGGAAGCAATGGTCTTGTTTTTGCTGTATGGTCTTTGATGTCATATTATGGTAGCAGAATGGTCATGTATCATGGTGCTAAAGGTGGTACTGTTTATTCAGTTGGAATTTCAATAACACTTGGAGGATTGGCTTTCGGAACTAGTTTATCAAATGTGAAGTACTTCTCAGAAGCAAGTGCAGCAGGAGAAAGAATAATGGAAGTGATAAAAAGAGTTCCAAAGATAGATTCTGAAAACATGGAAGGTGAAATTATAGAGAAAGTCTTGGGGGAAGTTGAGTTCAACCATGTTGAATTTGTGTATCCATCAAGACCAGAAAGTGTGATCTTAAATGATTTTTGCTTGAAGGTTCCATCAGGAAAAACAGTGGCATTGGTAGGAGGAAGTGGTTCAGGAAAATCAACAGTTGTATCACTTTTACAAAGATTTTATGATCCAATTGGTGGAGAGATTCTTCTTGATGGAGTTGCTATTCATAAGTTGCAACTTAAGTGGCTTAGGTCACAAATGGGTTTAGTGAGTCAAGAACCTGCTTTGTTTGCAACAAGCATTAAGGAGAATATACTTTTTGGAAGAGAGGATGCTACATATGAAGAAATTGTGGATGCTGCTAAAGCTTCCAATGCTCATAATTTCATTTCATTGTTGCCACAAGGATATGATACTCAGGTTGGGGAGAGGGGAGTTCAAATGTCAGGGGGACAAAAGCAAAGAATTGCAATTGCAAGAGCCATCATAAAAATGCCAAAAATTCTATTGTTAGACGAAGCAACAAGTGCACTCGATTCTGAATCCGAACGAGTCGTCCAAGAAGCTCTAGACAAAGCTGCAGTTGGACGAACCACCATCATCATCGCTCACCGCTTATCTACCATCCAAAATGCAGACATTATTGCGGTCGTTCAAAATGGTCTGGTCATGGAAATGGGATCTCACGATAGCCTCATGCAAAATGACAATTCTCTTTACACATCCCTTGTTCGTCTCCAACAAACTAGAAATGACCAAAGTGATGACACTCCATCTATCATGAATAGAGATCACATGGAAATCACGAGTAGTCGTAGACTTGTGAGTCATTCTAGCTCTTTCAACTCAATGACACACGGTGGTGATGATATCGTTAATTATAACAATGATGTTGAAGATACTGTTAATAATGATGTTGCAGTTGTTGATCACAATAATAATGATCATAAGTATAATAAGAAAAGGGAGAATGTCGAGGTTCCATCGTTTCGAAGGTTGTTGGCCATGAATGGGCCAGAGTGGAAGCAAGCATGTTTGGGTTGTTTTAATGCGGTTTTATTCGGTGCGATTCAACCTGTGTATTCGTTTGCAATGGGGTCGGTTATATCAGTTTATTTTATTGAGGACCACGATGAGATCAAGAAACAAATTAGGATTTATGGTTTTTGTTTTCTAGGGCTGGCTGTTATTTCAATGGTTATTAATATGCTTCAACATTATAGCTTTGCTTACATGGGAGAGTATTTGACTAAGAGGGTTAGAGAAAAAATGTTTTCTAAGATACTCACATTTGAAGTTGGTTGGTTTGATGAAGATCAAAATTCTACAGGTTCTGTTTGCTCTAGACTTGCCAAAGATGCCAATGTGGTAAGATCTTTGGTGGGTGATAGATTGGCATTAGTAGTACAAACAATTTCAGCGGTGGTAATAGCATTCACAATGGGCCTAATCATTGCATGGAAACTAGCCATTGTTATGATAGCAGTTCAACCACTTATCATTTATTGTTTCTACACAAGGCGTGTCCTTCTTAAGAACATGTCAAGCAAAGCCATCAAGGCTCAAGATCAGTGTAGCAAAATAGCTGCTGAAGCTGTTTCAAATCTAAGAACCATCAATGCTTTTTCATCTCAAGATAGAATTCTCAAAATGCTTGAAAAGGCCCAACAAGGCCCGAGTCATGAAAGTGTTAGACAGTCTTGGTTTGCAGGTATTGGGCTTGCATGTTCACAATGTCTCAATTATTCTACTTGGGCTTTGGACTTTTGGTATGGTGGAAAACTTGTGTCGCAAGGTTATATCTCGGCTAAGGCGTTATTTAAAACTTTTATGATTTTGGTAAGTACAGGAAGAGTTATTGCTGATGCCGGTAGCATGACGAGTGATCTTGCTAAAGGCTCTGATGCCATTGGATCAGTTTTTGCAATTCTCGATAGGTATACAAAAATCAAGCCCAATGACTTGAGAGGTTACAAAGCTGAAAAATTAATAGGAATAATTGAACTTTTTGATGTACATTTTGCATATCCGGCTAGACCTAATGTGATGATTTTTCAAGGGTTCTCGATTAAAATTGATGCTGGAAAATCGACAGCTTTGGTAGGGGAAAGTGGTTCTGGAAAATCAACAATCATAGGACTTATTGAAAGATTCTATGATCCACTTAAAGGGATAGTGACAATTGATGGTAGAGACATAAAGACATATAATCTAAGGTCATTAAGGGAACACATTGCACTTGTGAGTCAAGAACCAACATTGTTTAGTGGTACCATAAGGGAAAATATTGCATATGGAGCTTACGATGATAAGGTTGATGAGAGTGAAATTATAGAGGCATCAAAGGCTGCAAGTGCTCATGATTTTATATCAAGCTTAAAAGATGGTTATGATACATTGTGTGGTGATAGAGGAGTTCAACTTAGTGGTGGTCAAAAACAAAGAATTGCAATAGCTAGAGCTATATTGAAGAATCCAGAGGTGTTGCTTTTGGATGAAGCAACAAGTGCACTTGATAGTCAATCTGAGAAATTAGTCCAAGATGCTTTAGAAAGGGTTATGGTTGGAAGGACAAGTGTGGTTGTGGCACATAGGTTGAGTACTATACAAAATTGTGATTTGATTGCTGTTTTGGATAAGGGCATTGTTGTTGAGAAAGGAACACATTCAAATTTATTGTCAAAAGGGCCAAGTGGTGCTTATTACTCTTTGGTAAGTCTGCAAAGAAGACCAAACAATTTAATTTCGTATTCTTCACATGAAATCAACTAA 3828 0.3783 MGGGDQKNVYIVKKKKKNGSFKSIFMHADVLDWFFMVFGLIGSIGDGISVPLLLFIAGRLMNSIGSASGASSNNFVHDINKNAVLFLYLACASFVACFLEGYCWTRTGERQAARMRVRYLKAILRQDVAYFDLHITSTSEVITSVSNDSLVIQDVISEKVPNFLMNASMFLGSYIAAFALLWRLAIVGFPFLVLLVIPGFMYGRISMGLARKIREEYNKAGTIAQQAISSIRTVYSFAGESKTIAAFSNALEGSVKLGLKQGLAKGIGIGSNGLVFAVWSLMSYYGSRMVMYHGAKGGTVYSVGISITLGGLAFGTSLSNVKYFSEASAAGERIMEVIKRVPKIDSENMEGEIIEKVLGEVEFNHVEFVYPSRPESVILNDFCLKVPSGKTVALVGGSGSGKSTVVSLLQRFYDPIGGEILLDGVAIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGREDATYEEIVDAAKASNAHNFISLLPQGYDTQVGERGVQMSGGQKQRIAIARAIIKMPKILLLDEATSALDSESERVVQEALDKAAVGRTTIIIAHRLSTIQNADIIAVVQNGLVMEMGSHDSLMQNDNSLYTSLVRLQQTRNDQSDDTPSIMNRDHMEITSSRRLVSHSSSFNSMTHGGDDIVNYNNDVEDTVNNDVAVVDHNNNDHKYNKKRENVEVPSFRRLLAMNGPEWKQACLGCFNAVLFGAIQPVYSFAMGSVISVYFIEDHDEIKKQIRIYGFCFLGLAVISMVINMLQHYSFAYMGEYLTKRVREKMFSKILTFEVGWFDEDQNSTGSVCSRLAKDANVVRSLVGDRLALVVQTISAVVIAFTMGLIIAWKLAIVMIAVQPLIIYCFYTRRVLLKNMSSKAIKAQDQCSKIAAEAVSNLRTINAFSSQDRILKMLEKAQQGPSHESVRQSWFAGIGLACSQCLNYSTWALDFWYGGKLVSQGYISAKALFKTFMILVSTGRVIADAGSMTSDLAKGSDAIGSVFAILDRYTKIKPNDLRGYKAEKLIGIIELFDVHFAYPARPNVMIFQGFSIKIDAGKSTALVGESGSGKSTIIGLIERFYDPLKGIVTIDGRDIKTYNLRSLREHIALVSQEPTLFSGTIRENIAYGAYDDKVDESEIIEASKAASAHDFISSLKDGYDTLCGDRGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKLVQDALERVMVGRTSVVVAHRLSTIQNCDLIAVLDKGIVVEKGTHSNLLSKGPSGAYYSLVSLQRRPNNLISYSSHEIN* 1276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0215 1275 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1015 1260 IPR027417 -
Mtr6g0215 1275 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 37 326 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0215 1275 CDD ABC_MTABC3_MDL1_MDL2 361 599 - -
Mtr6g0215 1275 SUPERFAMILY ABC transporter transmembrane region 678 997 IPR036640 GO:0005524|GO:0016021
Mtr6g0215 1275 CDD ABC_6TM_Pgp_ABCB1_D1_like 36 334 - -
Mtr6g0215 1275 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 599 IPR027417 -
Mtr6g0215 1275 Gene3D - 359 631 IPR027417 -
Mtr6g0215 1275 Pfam ABC transporter transmembrane region 37 308 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0215 1275 Pfam ABC transporter transmembrane region 697 967 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0215 1275 ProSitePatterns ABC transporters family signature. 1160 1174 IPR017871 GO:0005524
Mtr6g0215 1275 Gene3D - 1009 1267 IPR027417 -
Mtr6g0215 1275 SMART AAA_5 1046 1240 IPR003593 -
Mtr6g0215 1275 SMART AAA_5 388 692 IPR003593 -
Mtr6g0215 1275 ProSitePatterns ABC transporters family signature. 500 514 IPR017871 GO:0005524
Mtr6g0215 1275 Pfam ABC transporter 379 528 IPR003439 GO:0005524
Mtr6g0215 1275 Pfam ABC transporter 1038 1188 IPR003439 GO:0005524
Mtr6g0215 1275 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 703 984 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0215 1275 CDD ABC_6TM_Pgp_ABCB1_D2_like 686 1002 - -
Mtr6g0215 1275 CDD ABC_MTABC3_MDL1_MDL2 1019 1260 - -
Mtr6g0215 1275 SUPERFAMILY ABC transporter transmembrane region 32 345 IPR036640 GO:0005524|GO:0016021
Mtr6g0215 1275 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1019 1257 IPR003439 GO:0005524
Mtr6g0215 1275 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 21 1265 - -
Mtr6g0215 1275 Gene3D ABC transporter type 1, transmembrane domain 85 988 IPR036640 GO:0005524|GO:0016021
Mtr6g0215 1275 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 21 1265 IPR039421 -
Mtr6g0215 1275 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 361 597 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0215 Mtr-Chr6 2493869 2500990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0215 13 1261 Calmodulin-binding Proteins AT2G36910 44.192 0.0 1053
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0215 K05658 - gmx:100807709 1942.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0215 6 2493869 2500990 Mtr6g0215 6 2493869 2500990 ECH