Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0214 ATGAAATTCAAACGGTGCATGGGTTCACCAAGTGCTGATTCCTCTGAAAATGGAGGTGGCAGTGTTGGAGGTGGAGTTGTTAATGGCGGTGGAGGTGCAAGTACTCCCAGGAAGCTGACAACCATTGATGCTTTATCTTATTTGAAGGAAGTGAAAAACACGTTTCCGGATCAAAAAGAAAAATATGACATGTTCCTTCAGGTCATGAAAGATTTCAAGGCTCAAAAGACTGACACTCATGGTGTCATAGCTGCTGTCAAGGAACTATTCAAAGGTCACAACAATTTGATTTATGGATTCAACGCTTACCTACCAAAAGGACATGAGATAAGACTTGATGAGGATGAAGCTCCTCAAAAGAAAAAGGTTGAATTTGAAGATGCTATTAGTTTCGTGGGCAAAATAAAGAACCGATTCCAAAATGAAGAGCATGTTTACAAATCATTCTTGGACATTTTGAATATGTATCGCGAAGAACACAAGACTATCACTGAGGTTTACAGTGAGGTTGCTACCCTTTTTAAGGACCATAATGATTTGCTCGAGGAGTTCACTAGATTCTTACCAGATAATTCGCTAGAACCTTCCACTCAACATGCTCCATTTGGTCATCGTGATCTGAGTGTTGAACATCCTGATGTGGATGACGAGGAACCAATGAACATGCACAAGGAGCAAAGGAAACGTGAGATCAGGGATATAAGGAAACATGATTTGAACTCACTACGCTCTCCTAACAAAAAGAAATCTGTTAAGAAGGCTGAAGCTAATGGATTGTCTTCTGACTTAGCTTCTCATGACGATAAAGATGCGTTAAAGATCATGTATAGTCAAGCATTAAGTTTATGTGCGAAAGTTAAGGAGAGATTGAGCAGCGCTGAGGACTACCAAACATTCTTGAAGTGCCTTCATAATTTTAGCAATGGAATAATAAAAAAGAATGAGTTACAAAATATGGTGACTGATTTACTTGGAAAGCATTCTGATCTCATGAGCGAATTCAATGATTATTTGGAGCGTTGTGAAAATACTGACGGGTTCCTTGCTGGTGTCGCGAGTGAAAAGCCACTCGATACTGACGGTCATTTATCGGAATCAACCAAGTTGGAGGACGACGAAGACAAAGAACACAAGCATGAGATGGAAGTATCTGAAGAGAGAGAAACATACAGGGAAAAATACATGGGAAAATCCATTCAAGAACTTGACCTTAGCGTCGGCAAACGTTGTTCTCTGGGCTACCAGCTTCTACCTACTGATGACAGGCTGGACATTTGTATACACATTGTGCGCGGTGACAAGTCTGATGTCAGAGGTTGCAGCGGTCGTAGCCAGCAATCACATTGGAGGCAGCGCGCATGGATTGGTCTTCTAATTATTATCAATTTATTTTTGTTTTATTTTAATTTTTTGAACAAGTATTAG 1425 0.4021 MKFKRCMGSPSADSSENGGGSVGGGVVNGGGGASTPRKLTTIDALSYLKEVKNTFPDQKEKYDMFLQVMKDFKAQKTDTHGVIAAVKELFKGHNNLIYGFNAYLPKGHEIRLDEDEAPQKKKVEFEDAISFVGKIKNRFQNEEHVYKSFLDILNMYREEHKTITEVYSEVATLFKDHNDLLEEFTRFLPDNSLEPSTQHAPFGHRDLSVEHPDVDDEEPMNMHKEQRKREIRDIRKHDLNSLRSPNKKKSVKKAEANGLSSDLASHDDKDALKIMYSQALSLCAKVKERLSSAEDYQTFLKCLHNFSNGIIKKNELQNMVTDLLGKHSDLMSEFNDYLERCENTDGFLAGVASEKPLDTDGHLSESTKLEDDEDKEHKHEMEVSEERETYREKYMGKSIQELDLSVGKRCSLGYQLLPTDDRLDICIHIVRGDKSDVRGCSGRSQQSHWRQRAWIGLLIIINLFLFYFNFLNKY* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0214 474 SUPERFAMILY PAH2 domain 274 341 IPR036600 GO:0006355
Mtr6g0214 474 MobiDBLite consensus disorder prediction 1 30 - -
Mtr6g0214 474 Gene3D Paired amphipathic helix 269 343 IPR036600 GO:0006355
Mtr6g0214 474 SUPERFAMILY PAH2 domain 34 106 IPR036600 GO:0006355
Mtr6g0214 474 Gene3D Paired amphipathic helix 119 192 IPR036600 GO:0006355
Mtr6g0214 474 PANTHER SIN3B-RELATED 2 202 IPR039774 GO:0003714
Mtr6g0214 474 PANTHER SIN3B-RELATED 201 420 IPR039774 GO:0003714
Mtr6g0214 474 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Mtr6g0214 474 Pfam Paired amphipathic helix repeat 144 188 IPR003822 GO:0006355
Mtr6g0214 474 Pfam Paired amphipathic helix repeat 294 338 IPR003822 GO:0006355
Mtr6g0214 474 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Mtr6g0214 474 MobiDBLite consensus disorder prediction 192 263 - -
Mtr6g0214 474 ProSiteProfiles PAH domain profile. 121 191 IPR003822 GO:0006355
Mtr6g0214 474 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Mtr6g0214 474 MobiDBLite consensus disorder prediction 204 255 - -
Mtr6g0214 474 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 201 420 - -
Mtr6g0214 474 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 2 202 - -
Mtr6g0214 474 SUPERFAMILY PAH2 domain 118 190 IPR036600 GO:0006355
Mtr6g0214 474 MobiDBLite consensus disorder prediction 355 385 - -
Mtr6g0214 474 MobiDBLite consensus disorder prediction 358 385 - -
Mtr6g0214 474 ProSiteProfiles PAH domain profile. 272 341 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0214 Mtr-Chr6 2474398 2478952 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0214 17 145 WRKY Transcription Factor Family AT4G12020 43.077 3.04e-19 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr6g0214 PAH 1.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0214 K11644 - gmx:100807181 542.732