Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0212 ATGAAGAGGGCTAGAGATGATATTTACTCTGCTTCTGCTTCTCAATTCAAAAGACCCTTTGGTTCATCACGTGGTGATTCCTATGGTCAAGGCCCCGGAGGTGGCGGTGGCGGTGGTGGAGGTGGAGTTAACGGAGGAGGAGGAGGAGGTGGGGGAGCAACTACCTCCCAGAAATTGACAACCAATGATGCTTTATCCTATTTGAAGGAAGTGAAAAACATGTTTCAGGATCAAAAAGAAAAATATGACATGTTCCTCGAGGTCATGAAAGATTTCAAGGCTCAAAAGACTGACACTACTGGTGTCATAGCAAGGGTTAAGGAACTATTCAAAGGTCACAACCATTTGATTTTTGGATTTAACACTTTCCTGCCAAAGGGGTATGAAATAACACTTGATGAGGATGAGGACGAAGCTCCTCCGAAGAAAACAGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATTAAGAAACGTTTCCAAAATGATGAACATGTTTACAAATCATTTTTGGACATTTTGAATATGTATCGCAAAGAGCACAAGACCATCACTGAGGTTTATAGTGAGGTTGCTACCCTTTTTAAGTCGCATGGAGATTTGCTCGATGAGTTCACTAGATTCTTACCAGATAATTCTTCAGCACCTTCCACACAGCATGCTCCATTTGGTCGAAATTCAATGCAGCGCCTCAATGAGCGGAGTTCTATGGCACCCATGATGCGGCAAATGCAAGTAGATAAGCAACGATATCGGCGAGACCGATTTTCTTCTCATGATCGTGATATAAGTGTTGAACGTCCTGATCTGGATGATGACAAAACAATGATGAACTTTCACAAGGAGCAGAGGAAGCGTGAGAGCAGGGATAGAAGGATGCGCGATCACGATGATAGAGAACATGATCTTGATAACAGCAGGGATTTGCACTCACAACGCTTTCCTGACAAAAAGAAATCTGTTAAGAAGACTGAAGCTTATGACTTTGCTGCTCATGATGATAAAGATGGAATGAAGCTCATGTATAGTCAAGCAATCAGTTTCTGCGATAAAGTTAAGGAGAAGTTGAGCAGCGCTGAGGACTACCAAACATTCTTGAAGTGCCTTAATATTTTTGGCAACGGAATTATAAAAAAGAATGATTTACAAAATTTGGTGACCGATTTACTTGGAAAGCATTCTGATCTCATGAGCGAATTCAATGATTTCTTAGAGCGTTGTGAAAATATTGACGGGTTCCTTGCTGGTGTCATGAGTAAAAAGCCACTTGCTGGTGATGGTCATTTATCTCGATCATCCAAGTTGGAGGACAAAGAACATAGGCGTGAGACGGATGGAGGTAAAGAGAAGGAAAGATACAAGGAGAAGTACATGGGAAAATCCATTCAAGAACTTGACCTTAGCGACTGCAAACGTTGTTCTCCGAGCTACCGGCTTCTACCGGCCGATTATCCAATTCCTACTGCTAGTCAGCGATCTGAGCTTGGTGCACATGTACTGAATGATCACTGGGTATCTGTGACTTCCGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGGAATCAATACGAAGAAAGCTTATTCAGATGTGAAGATGACAGGTTTGAGCTGGACATGTTATTAGAGTCTGTGAGTTCCGCTGCTAAACGAGCTGACGAGTTATATAACAGCATTGTTGAAAATAAGATTAGTGTGGAGAGTCTAAGCCGTATTGAAGATCACTTCACTGTTCTGAATCTAAGGTGCATTGAACGCCTATATGGTGACCATGGTCTTGATGTCTTAGACATACTGCGTAAGAACCCAACTCATGCTCTGCCTGTAATATTGACTCGATTGAAGCAGAAACAAGAGGAGTGGAATAGGTGTCGTTCAGATTTCAATAAAGTTTGGGCTGACATTTATTCTAAAAATCACTACAAATCACTTGATCATCGTAGCTTCTATTTCAAGCAACAAGATTCAAAGAACTTGAGCACAAAATCTTTGGTGACTGAGATCAAAGAAATTAAAGAGAAGCAGCAGAAAGAGGATGACATCGTTCAGACTATTGCTGCAGGAGCTAAACATCCTCTCATTCCACATTTTGAGTTTGACTTTTCTGATGCTGAAATTCACGAGGACCTGTATAAACTTGTTCGTTATTCATGTGAGGAAGTATTCCAAAGTAAAGAGTTATTCAATAAAATTATGAGGCTCTGGAGTACCTTCTTGGAACCGATGCTTGGTGTAACTTCCCAATCTCATGAGACGGAAAGGGCCGAGGACAGGAAAGTAGGACATAACGCTCGAAGTTCTGTTGCACCTAACGTAGGAGGTGATGGAAGCCCTAACAGAGAGTCGAATTCAAGGCTACCAAAATCTGACAAGAATGAAGTTGATGGTAGAGTAGGTGAAGTTAAAAATGGTCACCGGACTAGTGTAGCTGCCAATGATAAAGAAAATGGTTCTGTTGGTGGCGAGCTTGTTAGTAGAGATGATCATTTAATGGATAATAAAGGGCAGAAAAGTGTTGAAAGCAGTGATAAAGCCCCTGGATTTGTTAAACAGTTCTCCTCTGATGAACAAGCAGCGAGAAACTCTGCATCTGTCACAATTAGAGGCGAAAGCAGTGTGCATATGTCCCCAGGTCGCGTACTTACTCCAACCCGACCTACTGATGCTGATGTCTCTGTTGCTGTAGTCATAGCCAAGTCTCCGAGTGTTAATGTACCTTTGGTGGAGGGCGTTGCCGCTGCACCTCCAGTACCAGTGGCCAATGGCGTGTTAGTTGAGAACAGTAAAGTTAAAAGCAATGAAGAATCTTCTGTGCCTTGCAAAGTTGAAAAAGAAGAGGGTGAGTTATCCCCGAATGCTGACTCTGAGGAGGATAACTTTGTTGCCTATGGAGATTCAAATGCACAGTCAAACCAGAATGACGATAGAAGGAAATACGAGTCTAGAAATGGGGAGGACGAGCACCGTCCAGAGGCTGGAGGTGATAATGATGCAGATGCTGATGACGAAGACAGCGAAAATGTTTCTGAAGCTGGTGAAGATGTGTCAGGAAGTGAGTCTGCTGGTGATGAATGCTCCCGGGAAGATCATGAGGAGGAAGATATGGAACATGATGATGTTGATGGTAAAGCCGAAAGTGAAGGTGAAGCAGAGGGGATGTGTGATGCTGATGCACAAACTGGAGTAGATGGCTCATCTTTACCGTTATCAGAGAGGTTCCTGTCAACTGTGAAACCTCTCACAAAGCATGTATCTGCAGTTTCATTTGTTGAAGATGTGAAGGATTCAAGGGTGTTTTACGGAAATGATGATTTCTTTGTTCTCTTTAGGCTTCATCAAATTCTTTATGAAAGGATCTTATCTGCAAAAGAAAATTCAACAAGCGCTGAAATTAAATGGAAAACAAAAGATGCTAGTTCCACAGATCTTTACGCAAGATTTATGGATGCATTGTACAATTTGCTCGATGGATCCGCCGAGAATGCCAAGTTCGAAGATGAATGTCGAGCAATTCTTGGAAACCAGTCTTATGTGCTATTCACATTGGACAAGTTAATATATAAATTAATCAGACAGCTTCAAACTGTTGCAACCGATGAGGAAGACGCTAAGCTTCTCCAATTATACGAGTATGAAAAGTCTCGAAAACCTGGGAAATTAAATGATTCAGTGTATCATTCAAATGCGCATGTCATCCTTCACGAGGAGAACATATATCGTTTTCAATGTTCATCTAGTTCCTCTCGGCTCTCCATCCAGCTCATGGACAATATGAATGAAAAGCCCGAGATTGCTGCTGTTGCTGTTGATCCAGATTTTTCATTTTATCTGCACAATGATTTTCTGTCTGTCCTCCCCGGCAAAAAGGAGCCTCATGGCATTTTACTGGAAAGAAACAAACCAAAATATGGGGACTTAGATGAGCTTTCTGCAATTTGTGCTGTAATGGAAGATGTCAAAGTAGTTAATGGATTGGAATGCAAGATATCTTGCAACTCATCCAAGATTTCTTATGTTCTTGACACACAAGATTTTTTCTTCCGACCAAGAAGGAAAAGGCGAACATCATCAACAACATCATCATCATCAAGTACAGCATCTTCTCGGTCTCGCAGGGAAAGAGAGGAAAGATTCCGCAAATTGATGGCGTCCTCCACCTAA 4164 0.4179 MKRARDDIYSASASQFKRPFGSSRGDSYGQGPGGGGGGGGGGVNGGGGGGGGATTSQKLTTNDALSYLKEVKNMFQDQKEKYDMFLEVMKDFKAQKTDTTGVIARVKELFKGHNHLIFGFNTFLPKGYEITLDEDEDEAPPKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKTITEVYSEVATLFKSHGDLLDEFTRFLPDNSSAPSTQHAPFGRNSMQRLNERSSMAPMMRQMQVDKQRYRRDRFSSHDRDISVERPDLDDDKTMMNFHKEQRKRESRDRRMRDHDDREHDLDNSRDLHSQRFPDKKKSVKKTEAYDFAAHDDKDGMKLMYSQAISFCDKVKEKLSSAEDYQTFLKCLNIFGNGIIKKNDLQNLVTDLLGKHSDLMSEFNDFLERCENIDGFLAGVMSKKPLAGDGHLSRSSKLEDKEHRRETDGGKEKERYKEKYMGKSIQELDLSDCKRCSPSYRLLPADYPIPTASQRSELGAHVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKRADELYNSIVENKISVESLSRIEDHFTVLNLRCIERLYGDHGLDVLDILRKNPTHALPVILTRLKQKQEEWNRCRSDFNKVWADIYSKNHYKSLDHRSFYFKQQDSKNLSTKSLVTEIKEIKEKQQKEDDIVQTIAAGAKHPLIPHFEFDFSDAEIHEDLYKLVRYSCEEVFQSKELFNKIMRLWSTFLEPMLGVTSQSHETERAEDRKVGHNARSSVAPNVGGDGSPNRESNSRLPKSDKNEVDGRVGEVKNGHRTSVAANDKENGSVGGELVSRDDHLMDNKGQKSVESSDKAPGFVKQFSSDEQAARNSASVTIRGESSVHMSPGRVLTPTRPTDADVSVAVVIAKSPSVNVPLVEGVAAAPPVPVANGVLVENSKVKSNEESSVPCKVEKEEGELSPNADSEEDNFVAYGDSNAQSNQNDDRRKYESRNGEDEHRPEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECSREDHEEEDMEHDDVDGKAESEGEAEGMCDADAQTGVDGSSLPLSERFLSTVKPLTKHVSAVSFVEDVKDSRVFYGNDDFFVLFRLHQILYERILSAKENSTSAEIKWKTKDASSTDLYARFMDALYNLLDGSAENAKFEDECRAILGNQSYVLFTLDKLIYKLIRQLQTVATDEEDAKLLQLYEYEKSRKPGKLNDSVYHSNAHVILHEENIYRFQCSSSSSRLSIQLMDNMNEKPEIAAVAVDPDFSFYLHNDFLSVLPGKKEPHGILLERNKPKYGDLDELSAICAVMEDVKVVNGLECKISCNSSKISYVLDTQDFFFRPRRKRRTSSTTSSSSSTASSRSRREREERFRKLMASST* 1388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0212 1387 MobiDBLite consensus disorder prediction 750 829 - -
Mtr6g0212 1387 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1367 - -
Mtr6g0212 1387 PANTHER SIN3B-RELATED 1 1367 IPR039774 GO:0003714
Mtr6g0212 1387 MobiDBLite consensus disorder prediction 1 57 - -
Mtr6g0212 1387 SMART hdac_interact2seq4b 470 570 IPR013194 -
Mtr6g0212 1387 Pfam C-terminal domain of Sin3a protein 1100 1347 IPR031693 -
Mtr6g0212 1387 Pfam Paired amphipathic helix repeat 361 405 IPR003822 GO:0006355
Mtr6g0212 1387 Pfam Paired amphipathic helix repeat 166 210 IPR003822 GO:0006355
Mtr6g0212 1387 Pfam Paired amphipathic helix repeat 80 124 IPR003822 GO:0006355
Mtr6g0212 1387 Gene3D Paired amphipathic helix 337 410 IPR036600 GO:0006355
Mtr6g0212 1387 ProSiteProfiles PAH domain profile. 57 127 IPR003822 GO:0006355
Mtr6g0212 1387 SUPERFAMILY PAH2 domain 140 212 IPR036600 GO:0006355
Mtr6g0212 1387 MobiDBLite consensus disorder prediction 1027 1041 - -
Mtr6g0212 1387 MobiDBLite consensus disorder prediction 247 320 - -
Mtr6g0212 1387 MobiDBLite consensus disorder prediction 972 996 - -
Mtr6g0212 1387 ProSiteProfiles PAH domain profile. 339 408 IPR003822 GO:0006355
Mtr6g0212 1387 MobiDBLite consensus disorder prediction 785 803 - -
Mtr6g0212 1387 MobiDBLite consensus disorder prediction 431 451 - -
Mtr6g0212 1387 MobiDBLite consensus disorder prediction 426 451 - -
Mtr6g0212 1387 MobiDBLite consensus disorder prediction 928 1052 - -
Mtr6g0212 1387 Gene3D Paired amphipathic helix 63 125 IPR036600 GO:0006355
Mtr6g0212 1387 SUPERFAMILY PAH2 domain 341 408 IPR036600 GO:0006355
Mtr6g0212 1387 MobiDBLite consensus disorder prediction 233 320 - -
Mtr6g0212 1387 MobiDBLite consensus disorder prediction 866 886 - -
Mtr6g0212 1387 Pfam Sin3 family co-repressor 472 563 IPR013194 -
Mtr6g0212 1387 ProSiteProfiles PAH domain profile. 143 213 IPR003822 GO:0006355
Mtr6g0212 1387 SUPERFAMILY PAH2 domain 55 126 IPR036600 GO:0006355
Mtr6g0212 1387 MobiDBLite consensus disorder prediction 1352 1387 - -
Mtr6g0212 1387 Gene3D Paired amphipathic helix 142 214 IPR036600 GO:0006355
Mtr6g0212 1387 MobiDBLite consensus disorder prediction 1369 1387 - -
Mtr6g0212 1387 MobiDBLite consensus disorder prediction 997 1011 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0212 Mtr-Chr6 2452431 2461859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0212 43 137 WRKY Transcription Factor Family AT4G12020 54.737 2.51e-22 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr6g0212 Sin3a_C 5.5e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0212 K11644 - gmx:100812405 2089.69