Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0204 ATGGGTGGTGGTGAGCAGAAAAATGTTTCTATTAATGTTAAGAAAAAGAAAAATGGTTCTTTTAAGTCCATTTTCATGCATGCTGATGTTCTAGACTGGTTTTTAATGGTTTTTGGTTCATTTGGGGCTATTGGTGATGGCATAATGATCCCTATGGTGTTGCTAATCACAAGCAAAATTATGAACTCTATTGGTGGTTTTTCTAGCCAAACAAGTAGCAATTTTCTACATAACATCAATAAGAATGCTGTTATTGTGTTATATTTGGCGTGTGCCTCTTTTTTTCTTTGCTTCCTAGAGGGTTATTGTTGGACAAGAACAGGTGAGAGACAAGCTGCAAGAATGAGAGTTAGGTACTTAAAAGCAGTTCTAAGACAAGAAGTAGCATACTTTGATTTGCACGGTACAAGCATATCAGAAGTCATCACCAATGTCTCTAGTGACAGCCTAATAATTCAAGATGTCCTTAGTGAAAAGGTTCCAAATTTTTTGAAGCATGTATCTAAGTTCATTGGGAACTACATAGTGGCATTTGCATTGTTATGGAGATTGGCCATTGTTGGGTTCCCTTTTGTGGTTCTAATTGTGACTCCTGGCTTCATATATAAGAGGATTATGATTAGGTTGGCTAGAAATATCAGAGAAGAGTACAATCAAGCTGGTACAATAGCAGAACAAGCGATATCTTCAATTAGAACTGTTTATTCCTTTGCAGGGGAAAATAAGACTATATCTGCTTTCTCTGATTCACTTCAAGGATCAGTGAAGTTGGGATTGAAACAAGGCTTGGTTAAAGGCTTAGCTATAGGAAGCAATGCTATTGTGTATATTCAATGGTGTTTTATGTCATATTATGGTAGTAGAATGGTCATGTATCATGGTGCTAAAGGTGGTACTGTATTTGCAGTTGTACAATTGATGACATTTGGTGGAAAGGCTGTAGGAGTTAGTTTATCAAATGTGAAGTACTTCTCAGAAGCAAGTGTTGCAGGAGAAAGAATAATGGAAATGATAAAAAGAGTTCCAAAAATAGATTCTGAAAATATGGAAGGTGAAATTCTAGAGAAAGTCTTGGGGGAAGTTGAATTCAACCATGTTGAATTTGTGTATCCATCAAGACCAGAAAGTGTGATCTTAAATGATTTTTGCTTGAAGGTTCCATCAGGAAAAACAGTGGCATTAGTAGGAGAAAGTGGTTCAGGAAAATCAACAGTTGTATCACTTTTGCAAAGATTTTATGATCCAATTGGTGGAGAGATTCTTCTTGATGGAGTTGCTATTCATAAGTTGCAACTTAAGTGGCTTAGGTCACAAATGGGTTTAGTAAGTCAAGAACCTGCTTTGTTTGCAACAAGCATTAAGGAGAATATACTTTTTGGAAGAGAGGATGCTACATATGAAGATGTTGTGGATGCTGCTAAAGCTTCCAATGCTCATAATTTCATTTCATTGTTGCCACAAGGATATGATACTCAGGTTGGGGAGAGGGGAGTACAAATGTCAGGGGGACAAAAGCAAAGGATTTCCATTGCAAGAGCCATAATCAAAAATCCAAGAATTCTATTGCTAGACGAAGCAACAAGTGCACTAGATTTTGAATCCGAACGAGTTGTCCAAGAAGCTTTTGAGAAAGCCACAGTTGAACGCACCACCATTATCATCGCTCACCGCTTATCCACCATCAGAACTGCAGATATCATTGCAATCGTTCAAAATGGTAAGATCGTGGAAACAGGATCTCACGAAAGCCTTATGCAAAATGACAGCTCTCTTTACACCTCCCTCGTTCGTCTTCAACAAACTAGAAATGACCAAAGTGACCACACTCCACCTATCATGAATAGAGATCACATCCAAAACACGTGTAGTGATACACTCGTGAGTCGTTCTAGCTCTTTCAACTTAATGACACATGGTAGTGGTGATGTCGTTAACTGTAACAATGTTGTTGTACTTGATGATGAAAATGATGATAGTAGTAATAATAATAAAAATATAAAGAGCAAAAAGAAGGTAAAGGTTCCTTCATTTCGAAGATTGTTAGCAATGAATGTGCCAGAATGGAAGCAAGCGTGTTTGGGATTTTTGAATGCGGTTTTATCTGGTGCGGTTGAACCGATGTTTTCATTTGCAATGGGGTCAACTATTTCTGTTTATTTTCTTAACAACCATGATGAGATCAAGAAGCAGATTAGGATTTATATGCTTTGTTTTCTAGGGTTAGCCTTATCCTCAATGGTTTTTAATGTGCTTCAGCATTATTGTTTTGCATACATGGGAGAGTACTTAACTAAGAGGGTTAGAGAAAGAGTGTTTTCCAAGATACTCACTTTTGAAGTTGGTTGGTTTGATGAAGATCAAAATTCTACAGGTGCTATTTGTTCTAGACTTGACAAAGAAACCAATGTGGCAAGGACTTTGGTGGGTGATAGTTTAGGAACAGTGGTACAAACCATATCAGCAGTGGTAACAACATTCATAATGGGACTAATCATTACATGGAGACTATCAATTGTTATGATAGCAGTTCAACCAATTCACATGGTTTGTTTCTACACAAGGAGTTCCCTTCTTAAGAGAATGTCAAGAAAAGCAATTGAAGCCCAAGATAAAAGTAGCAAAATAGCAGTTGAAGCTGTTTCGAATATTAGAACCATAACTGCTTTTTCATCTCAAGATAGAATTCTAAAAATTCTTGAAAAAGCCCAACAAGGCCCAAGTCATGAAAACATTAGACAATCTTGGTTTGCTGGTATTGGGCTTGCATGTGCACAAAGTCTCCATTCTTGTATTAGGGCATTCCACTTTTGGTACGGTGGAAAACTTGTGTCTCAAGGATATATAACAACTAAGGCATTATTTGAGACTATTATGATTTGGTTAAGTATTGGAAGAGTTATTGTTTATGTTGTAAACAACATGACTAATGACCTTGCTAAAGGCTTTGATGTTGTTGGGTCAGTGTTCGCAATTCTTGATAGGTATACAAAAATTGAGCCGGAAAATTTGGAAGGTTACAAAGTAGAAAAGTTGATAGGAAAAATTGAATTTCATGATGTACATTTTGCATATCCGTCTAGGCCTAATGCAATCATCTTTCAAGGGTTCTCGATTAAAATTAATGTCGGTAAATCAACGGCTTTGGTCGGGGAAAGTGGTTCTGGAAAATCGACAATCATAGGACTAATTGAGAGATTTTATGATCCAATAAAAGGGATAGTGACGATTGATGGTAGTGATATAAAGTCTTATAATCTAAGGTCATTAAGGAAGCATATTTCACTTGTGAGTCAAGAGCCAACATTGTTTGGTGGTACCATAAGGGAGAATATTGCATATGGAGCATATGATAAGGTTGATGAGAGTGAGATTATAGATGCAGCTAAGGCTGCAAATGCTCATGATTTTATATCAAGCTTAAAATATGGTTATGAGACATTGTGTGGTGATAGAGGAGTTCAACTTTCTGGTGGTCAAAAGCAAAGGATTGCAATAGCTAGAGCTATATTGAAGAATCCAAAGGTGTTGCTTTTGGATGAAGCAACAAGTGCACTTGATAGTCAATCAGAGAAGTTAGTGCAAGATGCTTTAGAAAGGGTTATGATTGGAAGAACAAGTGTGGTTGTGGCTCATAGGTTGAGTACTATACAAAATTGTGATATGATTGTTGTTTTGGATAAGGGTAGTGTTATTGAGAAAGGAACACATTCATCTTTGTTGTCTAAAGGACCAAGTGGAGCTTATTACTCTATGGTAAGTCTACAAAGAAGACCACCCAATACAATTGCTGACACTACACACTGTACACAGGAAATCAATTAA 3822 0.3694 MGGGEQKNVSINVKKKKNGSFKSIFMHADVLDWFLMVFGSFGAIGDGIMIPMVLLITSKIMNSIGGFSSQTSSNFLHNINKNAVIVLYLACASFFLCFLEGYCWTRTGERQAARMRVRYLKAVLRQEVAYFDLHGTSISEVITNVSSDSLIIQDVLSEKVPNFLKHVSKFIGNYIVAFALLWRLAIVGFPFVVLIVTPGFIYKRIMIRLARNIREEYNQAGTIAEQAISSIRTVYSFAGENKTISAFSDSLQGSVKLGLKQGLVKGLAIGSNAIVYIQWCFMSYYGSRMVMYHGAKGGTVFAVVQLMTFGGKAVGVSLSNVKYFSEASVAGERIMEMIKRVPKIDSENMEGEILEKVLGEVEFNHVEFVYPSRPESVILNDFCLKVPSGKTVALVGESGSGKSTVVSLLQRFYDPIGGEILLDGVAIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGREDATYEDVVDAAKASNAHNFISLLPQGYDTQVGERGVQMSGGQKQRISIARAIIKNPRILLLDEATSALDFESERVVQEAFEKATVERTTIIIAHRLSTIRTADIIAIVQNGKIVETGSHESLMQNDSSLYTSLVRLQQTRNDQSDHTPPIMNRDHIQNTCSDTLVSRSSSFNLMTHGSGDVVNCNNVVVLDDENDDSSNNNKNIKSKKKVKVPSFRRLLAMNVPEWKQACLGFLNAVLSGAVEPMFSFAMGSTISVYFLNNHDEIKKQIRIYMLCFLGLALSSMVFNVLQHYCFAYMGEYLTKRVRERVFSKILTFEVGWFDEDQNSTGAICSRLDKETNVARTLVGDSLGTVVQTISAVVTTFIMGLIITWRLSIVMIAVQPIHMVCFYTRSSLLKRMSRKAIEAQDKSSKIAVEAVSNIRTITAFSSQDRILKILEKAQQGPSHENIRQSWFAGIGLACAQSLHSCIRAFHFWYGGKLVSQGYITTKALFETIMIWLSIGRVIVYVVNNMTNDLAKGFDVVGSVFAILDRYTKIEPENLEGYKVEKLIGKIEFHDVHFAYPSRPNAIIFQGFSIKINVGKSTALVGESGSGKSTIIGLIERFYDPIKGIVTIDGSDIKSYNLRSLRKHISLVSQEPTLFGGTIRENIAYGAYDKVDESEIIDAAKAANAHDFISSLKYGYETLCGDRGVQLSGGQKQRIAIARAILKNPKVLLLDEATSALDSQSEKLVQDALERVMIGRTSVVVAHRLSTIQNCDMIVVLDKGSVIEKGTHSSLLSKGPSGAYYSMVSLQRRPPNTIADTTHCTQEIN* 1274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0204 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1008 1255 IPR027417 -
Mtr6g0204 1273 CDD ABC_MTABC3_MDL1_MDL2 1015 1255 - -
Mtr6g0204 1273 CDD ABC_6TM_Pgp_ABCB1_D2_like 681 998 - -
Mtr6g0204 1273 CDD ABC_MTABC3_MDL1_MDL2 361 599 - -
Mtr6g0204 1273 CDD ABC_6TM_Pgp_ABCB1_D1_like 36 334 - -
Mtr6g0204 1273 Gene3D ABC transporter type 1, transmembrane domain 85 981 IPR036640 GO:0005524|GO:0016021
Mtr6g0204 1273 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 21 1262 - -
Mtr6g0204 1273 Pfam ABC transporter 379 528 IPR003439 GO:0005524
Mtr6g0204 1273 Pfam ABC transporter 1034 1183 IPR003439 GO:0005524
Mtr6g0204 1273 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 698 954 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0204 1273 ProSitePatterns ABC transporters family signature. 500 514 IPR017871 GO:0005524
Mtr6g0204 1273 Gene3D - 1005 1261 IPR027417 -
Mtr6g0204 1273 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 361 597 IPR003439 GO:0005524
Mtr6g0204 1273 Pfam ABC transporter transmembrane region 38 308 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0204 1273 Pfam ABC transporter transmembrane region 692 958 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0204 1273 SMART AAA_5 388 574 IPR003593 -
Mtr6g0204 1273 SMART AAA_5 1042 1235 IPR003593 -
Mtr6g0204 1273 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 21 1262 IPR039421 -
Mtr6g0204 1273 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1015 1252 IPR003439 GO:0005524
Mtr6g0204 1273 SUPERFAMILY ABC transporter transmembrane region 673 994 IPR036640 GO:0005524|GO:0016021
Mtr6g0204 1273 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 37 326 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0204 1273 Gene3D - 359 621 IPR027417 -
Mtr6g0204 1273 ProSitePatterns ABC transporters family signature. 1155 1169 IPR017871 GO:0005524
Mtr6g0204 1273 SUPERFAMILY ABC transporter transmembrane region 32 342 IPR036640 GO:0005524|GO:0016021
Mtr6g0204 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 599 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0204 Mtr-Chr6 2371424 2377468 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0204 2 1256 Calmodulin-binding Proteins AT2G36910 41.831 0.0 989
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0204 K05658 - gmx:100807709 1843.55