Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0186 ATGGAGATTCACAAAAACACAAACAAGAAATGGGGTGGTTCCAAAAAGGAATCAAAATCATTAGAACCAATTGCAACTACTACTCCAAAGATGAAATGGAAGAAAATGATGATTTTCTTCAACACAACAAAAGCTACCCAAAACCAAAACCCACCTCAAGAATTTCTATGCCCCATTTCAGGTTCTCTCATGTCTGATCCTGTAATTGTCTCCTCTGGTCATTCCTTTGACCGAACCTCAGTACAAGCATGTAAAAATCTCAACTACACCCCCCAACTTGCTGATGGCACCACCCCAAATTTCACAACATTAATACCAAATCTTAACCTCAAATCCTCCATTCTCAAATGGACTCAAACCCAAACCAAAATGCAAACCAATCCAAATCTAACAACCACTGAAAACCTCGTACTCAAACTTATGTCTTCAAAACAACATGAACAGAATCAAAACAACCTCGTACTCAAACTAATGTCTTCAAAACAACATCAGCGTAACCAAAACAACCTCGTATCAAATAAAAACGACCAAGAAGAAGAAACACGACCAATATCAATGTTAACACCACGAAAAACCTCCTACTCAAGCTCAGAGGAATCTATAGCTACTGTCACTTCATCATCATCAACAAGAACAACACCACCACAGCTTCAAAGTTTCTGTTACTCTTCACCTTCTTCATCTGAACTTGAACCTTCAACAACACCGGAAGAAGAAGAAATAGTAACAAAACTCAGAAACCATGAATTGGTTATAGTAGAAGAAGGTTTAATCTCACTCAGAAAAATCACAAGAACGAATTTGGAAAGTAGAGTTCAACTTTGCAGCAATAGGGTACTATGTTTTCTGCGTTCTTTGATTTTGTCTAAGAACGAGGTTGTAAGAGTCAATGCACTTGCTTCATTGGTCAACCTTTCACTTGAGAAAGTTAACAAAGTGAAGATAGTCCGGTCAGGAATTGTTCCACCGTTGATTGAGGTTTTGAGGTTTGGATCGTGTGAATCGCAGGAACATGCTTCGTGTGCGATGTTTAGTTTAGCGCTTGATGATGATAATAAAACTGCGATTGGTGTTTTAGGTGCTCTTTTGCCATTGCTTCACGCGCTTAAATCAGAGAGTGAAAAGACGCGCCATGACTCGGGTTTGGCACTTTGTCATTTGTCTTTAGTGAGGAGTAATCGGGCTAAGATGGTTAAGCTAGGGTTTGTTTCGGTTTTGTTGGGGATGGTTAAGTCGGGTCATATGATGGATCAAGTTTTGTTGATGTTGGGTAATTTAGGGTTTGGATCGGATGGTCGGGCTGCTATGTTGGATGCAGGTGTTGTGGAGTGTTTGGTGGGTTTATTGTGTGGGAACGAGTTGGAGTCTGAGTCGACCAAAGAGAGTTGTGTTGCGGTTTTGCATGCATTGAGTCATGGCGGATTGAGGTTTAAGGCGGTGGCAAAGGAGGTTGGAGTTGTGGAAATGTTGCAAAAGATGGAGAAAATGAAGAGCGAGAAGGCTAAAGAAAAGGTGAGGAGGATATTGGAGGTGATGCGAGAAAAAGAGGTTGAAGAAGAGGAAGTGGATTGGGAGGAGTTGCTTGACTCAGGGTTCAGTGGTCGAACTATGAATCGACTCAACAGTGGATTGGATGATTTAAGTGTTAAATCGGATGAGCTGTGA 1665 0.4096 MEIHKNTNKKWGGSKKESKSLEPIATTTPKMKWKKMMIFFNTTKATQNQNPPQEFLCPISGSLMSDPVIVSSGHSFDRTSVQACKNLNYTPQLADGTTPNFTTLIPNLNLKSSILKWTQTQTKMQTNPNLTTTENLVLKLMSSKQHEQNQNNLVLKLMSSKQHQRNQNNLVSNKNDQEEETRPISMLTPRKTSYSSSEESIATVTSSSSTRTTPPQLQSFCYSSPSSSELEPSTTPEEEEIVTKLRNHELVIVEEGLISLRKITRTNLESRVQLCSNRVLCFLRSLILSKNEVVRVNALASLVNLSLEKVNKVKIVRSGIVPPLIEVLRFGSCESQEHASCAMFSLALDDDNKTAIGVLGALLPLLHALKSESEKTRHDSGLALCHLSLVRSNRAKMVKLGFVSVLLGMVKSGHMMDQVLLMLGNLGFGSDGRAAMLDAGVVECLVGLLCGNELESESTKESCVAVLHALSHGGLRFKAVAKEVGVVEMLQKMEKMKSEKAKEKVRRILEVMREKEVEEEEVDWEELLDSGFSGRTMNRLNSGLDDLSVKSDEL* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0186 554 Gene3D - 235 512 IPR011989 -
Mtr6g0186 554 SMART Ubox_2 54 117 IPR003613 GO:0004842|GO:0016567
Mtr6g0186 554 PANTHER U BOX DOMAIN-CONTAINING 31 542 - -
Mtr6g0186 554 MobiDBLite consensus disorder prediction 186 232 - -
Mtr6g0186 554 ProSiteProfiles U-box domain profile. 50 124 IPR003613 GO:0004842|GO:0016567
Mtr6g0186 554 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 137 IPR013083 -
Mtr6g0186 554 Pfam Armadillo/beta-catenin-like repeat 311 347 IPR000225 GO:0005515
Mtr6g0186 554 MobiDBLite consensus disorder prediction 160 174 - -
Mtr6g0186 554 MobiDBLite consensus disorder prediction 160 238 - -
Mtr6g0186 554 SUPERFAMILY ARM repeat 241 513 IPR016024 -
Mtr6g0186 554 SUPERFAMILY RING/U-box 48 120 - -
Mtr6g0186 554 Pfam U-box domain 52 121 IPR003613 GO:0004842|GO:0016567
Mtr6g0186 554 Coils Coil 160 180 - -
Mtr6g0186 554 Coils Coil 537 554 - -
Mtr6g0186 554 MobiDBLite consensus disorder prediction 1 26 - -
Mtr6g0186 554 CDD RING-Ubox 56 90 - -
Mtr6g0186 554 SMART arm_5 308 348 IPR000225 GO:0005515
Mtr6g0186 554 SMART arm_5 349 389 IPR000225 GO:0005515
Mtr6g0186 554 SMART arm_5 429 472 IPR000225 GO:0005515
Mtr6g0186 554 Coils Coil 486 518 - -
Mtr6g0186 554 MobiDBLite consensus disorder prediction 1 17 - -
Mtr6g0186 554 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 31 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0186 Mtr-Chr6 2142818 2145252 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0186 1 541 U-box Gene Family AT5G40140 47.302 1.57e-149 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0186 - - lja:Lj2g3v1020040.1 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0186 6 2142818 2145252 Mtr6g0186 6 2142818 2145252 ECH
Mtr6g0186 6 2142818 2145252 Mtr7g0104 7 1783079 1788543 PCT