Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0171 ATGGATAGTTCAAAGAATTCGGTAGATTGTGATGCTATTCGTGATGAAGGTATAGAAGTTGATAACTCAAATGATAATGAAGGTATAGAAGTTGATAACTCGAATGATAATGAAGGTATGGAAGTTGATAACTCTAACGATAATGAAGGTATAGAAGTTGATAACTCTAATGATAATGAAGTTATAGAAGTTGATAACTCTAATGATAATGAAGTTATAGAAGTTGATAACTGTAATGATGATGAAGCACGTTGGAAGCCTGAAACAGGGATGTGTTTTTCTTGCATAGATGATGTTAAAACATTTTATGGAGAGTATGCTTTGAAAAAGGGTTTTAGGTGGAAGATTAGAACATCAAGAAAAGGAGATAATGGAGAGATCTGCTATGTAATTCTTGCTTGCTCAAGAGAGGGATCTAGACTGTCAAAAAATTCGTTACAAACTCTCCCATCTAAGGAAAAAAATTGTCCAGCCAAGATTTGCATTAAGTTGGAAGACGATGGTTTGTGGTACATTAAAAGATTTGAATCTAGCCATTCTCACGAGACTACCCCTACAAAGGCAAGATTGTTCAAGGCTAACAGGAAAATGAACTTGCGTGTAAAGAGAGCAATCCAAAGCAATGATGATCCAGGAGTGAGGATCAAGAAGACTTTTCAACCTCTTGTTAAAGATGTAGGAGCGCATGAAATTACACCATTTTGCAAACGAGACATGGGAAATTATGTTAACAAGGAACGACATGCAATTGGAAAAGAAGACAACAACACAAGAATGATGGAACTCGAAGCTGAAGTAAAGCGAATAAGTGAAAGAATGGAGAAGTACCACTCAGAGCTGCTAGAAAAGATGGAGTGGATGAATGTCAAGATCAATCGAATCACAGATGCCTTTGGTACACTTCAAGGGTATTCGCATGGCACTCAATCGCAAGTTAAACCAACCAAACAACAGCTTTCTTGTATCCTTGAGTTTGGTGGTGTATCCATGGGGGTTGAGTTTGGTGATCTAAACATTAATCGTGGACCAGCAGGTGCAGGAGCTTTACTGCTTGCTGAAGATGGGAGTCTGCTCTATGGGTTTCGCCAAGGACTGGGTCACCAAACAAAAGAGTCCGCTGAGTATCGGGCTTTACTCTTGGGATTGAAACATGCGAGTATGAAGGGATTTAAGTATGTTACTGCCAAAGGAGACTCGGAACTTGTTATCAATCAGATTCTGGATCCCTGGAAAATCAAAGACGAACATTTAAAGAAATTATGTGCTGAGGCTTTGGAGCTGAGTGATAACTTTCACTCATTCCGCATCCAACACATTTCCAGGGAACGTAACTATGGAGCTGTTCGTAATGCAAACCGGGCCATCAATCTCACTGATGGTCAAGTTGAAGAAAATCATATGCATTAA 1407 0.3902 MDSSKNSVDCDAIRDEGIEVDNSNDNEGIEVDNSNDNEGMEVDNSNDNEGIEVDNSNDNEVIEVDNSNDNEVIEVDNCNDDEARWKPETGMCFSCIDDVKTFYGEYALKKGFRWKIRTSRKGDNGEICYVILACSREGSRLSKNSLQTLPSKEKNCPAKICIKLEDDGLWYIKRFESSHSHETTPTKARLFKANRKMNLRVKRAIQSNDDPGVRIKKTFQPLVKDVGAHEITPFCKRDMGNYVNKERHAIGKEDNNTRMMELEAEVKRISERMEKYHSELLEKMEWMNVKINRITDAFGTLQGYSHGTQSQVKPTKQQLSCILEFGGVSMGVEFGDLNINRGPAGAGALLLAEDGSLLYGFRQGLGHQTKESAEYRALLLGLKHASMKGFKYVTAKGDSELVINQILDPWKIKDEHLKKLCAEALELSDNFHSFRIQHISRERNYGAVRNANRAINLTDGQVEENHMH* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0171 468 MobiDBLite consensus disorder prediction 22 54 - -
Mtr6g0171 468 Pfam FAR1 DNA-binding domain 101 184 IPR004330 -
Mtr6g0171 468 MobiDBLite consensus disorder prediction 7 21 - -
Mtr6g0171 468 PANTHER PUTATIVE-RELATED 268 463 - -
Mtr6g0171 468 CDD RNase_HI_like 340 455 - -
Mtr6g0171 468 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 268 463 - -
Mtr6g0171 468 SUPERFAMILY Ribonuclease H-like 339 447 IPR012337 -
Mtr6g0171 468 MobiDBLite consensus disorder prediction 1 54 - -
Mtr6g0171 468 Gene3D - 335 460 IPR036397 GO:0003676
Mtr6g0171 468 ProSiteProfiles RNase H type-1 domain profile. 316 463 IPR002156 GO:0003676|GO:0004523
Mtr6g0171 468 Pfam Reverse transcriptase-like 338 454 IPR002156 GO:0003676|GO:0004523
Mtr6g0171 468 Coils Coil 252 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0171 Mtr-Chr6 2006408 2012372 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr6g0171 RVT_3 2.1e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0171 - - cam:101513893 264.233