Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0162 ATGTATGGGTTTGGTGGTGAGAAGAAGTGGAAACACAATCGGCACATGTGGCCTGTACCTTCTAACCCGACCACTGTAGTCACCGTTTCTTCACCGTCAAAATTTATATGCAAAGATGGACGCAAGATTCGTGTTGGTGACTGTGCACTATTCAAACCACCCCAGGATTCGCCTCCTTTTATTGGAATAATTCGCAAGTTAATATTTAATAAAGAAGAAAGTCCAAGTTTAGAAGTGAATTGGTTTTACCGACCTGCTGATTTGAAGCTCTCTAAAGGGATTGCAGTGGAAGCTGCACCAAACGAAGTCTTCTACTCCTTTCACAAGGATGAGACACATGCTGCATCATTACTCCATCCTTGTAAAGTCGCATTTCTCCGTAAAGGTGTTGAACTTCCTTCAGGGATATCCGCATTTGTTTGTAGACGAGTGTACGACATTGACAACAATTGTTTACGGTGGCTAACTGATAAGGACTTTGTTAATGATCAGCAGGAAGAAGTTGACCACCTATTAGACAAGACAAAACTAGAAATGCATGGGGCTGTGCAGTCAGGAGGCCGTTCTCCAAAACCATTGAATGGTCCAACGTCAACACAGTCATTGAAATCTAGTTCTGATAACATTCAAAATAGTTCTTCATTTGGTGTACAGGGTAAGGGAAAAAAGAGAGAGCGAGGTGATCAGGGATCTGATTCGTCTAAAAAAGAGCGATTATTTAAGGTAGAAGTTGGAGATTCTGGTCAGTTTAGACTGGAGATGCTAAGGACCGAGATTGCTAGAATCACTGAAAAAGGCGGGCTTGTGGACTTTGAAGGGGTTGAAAAATTTGTACAGCTCATGCAACCTGATAGTGCTGATAAAAAAATTGATTTGGCTGGGAGAACGATGCTTGTTGACGTGATATCGCTCACAGAACATTATGACTGTCTAGGCTGGTTCGTACAGCTTCGTGGTTTGCCTGTGTTAGATGAATGGCTACAAGAGGTCCATAAGGGGAAAATTGGCGATGGTAATGTTGATAAGTCTGAAGAATTTTTGTTAGCTTTACTCCGTGCATTGGATAAGCTTCCTGTGAACCTTCATGCACTACAAACCTGTAATGTTGGAAAATCTGTTAATAATTTACGCAGCCACAAAAATTCTGAAATTCAGAGGAAAGCCAGGAGTTTGGTAGACACATGGAAAAAGCGTGTTGAAGCTGAAATGAATATGACTGATACAAAACCTGGTTCAACCCGTGCTGTTTCTTGGCCCACAAAGCCATCACCGTCAGATGTTTCTCACTCTGGAAATAGGAGAACCGGAGGATCCTCTGAGAATGTTGCGAAGAGCTCTCCTATTCAACCTTCAGCATCCAAAAATTCCCAATCTAAACATAATTCTGGAGAAGTACTATCCAAGTTCTCTTCATCCCCTGGCTCAACTAAATCAATGACTGCCTCAGTAGGCAGCAACACAAAAGATCAAAATGTTAAACTCATTGTTGGTGCAACAACATCAGATTTACCTCTGACACCCATCAAGGAGGAGAGGAGCAGTAGTTCTAGTCAATCTCAAAACAACAGCAGATCTTGTTCTAGTGAACATGCGAAGAGCTCCACTGCAGGGTCTATAAGTGGGAGCAAAATTCCTGGTAATGCTTCCCGATCTCGAAAGTCGAGTAATGGTATACATGGAGCTGGCGTTGCTGTAGTTCTGAAGGACCATAGCTCTGCCAAGAATTCGACAAGAAATTCACCTTCTGATAAAGTTTCGCCAACCAGAATGTCCCATGAAAAACCATCTGATCAGCCCCTTTCCGATCAAGGGCATAATCAACGACTGATTGTGAGGTTGCCGAACACTGGGCGCAGTCCTTCCAGGGTAGCTAGTGGGGGCACTTTTGAAGAACCTGCTATTACATGCGGCAAAACATCACCTCCTGCCGACAAGAATGAGAATCAGGACAGAAGAGTTAAAGCTAAAACTGATTGTTTGCAAACCCATGTGTCGAATGTGATGAATGATGCATCCAATGCTAAGGAAATTACTGGTTGTGATGAAGCTAAGTGTTCTCCGCGAGTGGATGAGCGGTGCAGGGCTAATGAAGATGGTGATAAAGTAGCAGAAACGTCAAAAACAACCAGTTCTTCAACTGGATTTGTTTCCAGATCAGGGCAGACATATGATGCTTCTTTAAGCCCCATGAATGCATTAGTTGAGAGCTGTGTGAAATTTTCTGAAGCAAGTTCCTCTGTGTCCCCCGGAGATGATGGTATGAATCTGCTTGCTTCTGTGGCTGCAGGAGAAATGTCCAGATGTGAAAATGTCTCACCTCTGCCTTCACCCGAGAGGAAGTCTCCTGCAGCTGATGAATCAAGCTCAGGGAATGATCGACATTCTTTTGAAGCAGCTGGTCGCACTCAGAGACAGTCTGATGGTGGGGCTACCGGAGAGCATCCTGTGAATACTTTGCAATTCAAAAATAATTCTAGGCATCTGGTGACTATGGTATCGCGTGATTTTTCAGATGGTGAAGCCGTTTCATCTAGCTGTGTGGAGAAAACTGGTGATGGTAAAAAACAAGTAAATTTCTCTACTACAGACGCGATACAGAATACTGAAGGTTCATGCTTACGGCCTGACACCAAAGAGGATACGTCTGAAACTGTATTTCCAGGCAGAAAGGAGTCTCATGCAGAGGCGGGAGGTGCGGAGGGTTTTCACGAGAGGAGGGAATCGGGAACTCAATGGCCTAAAAACAGCACTAGTCCAGGCTCTAAAAAGTTGAGGACTTCCTCTTTTGATGATGATCAGAAGACTGATAACAAGGATGGCGGTCTCACAGAGCACGGGAAAATGTTAGTTTCAGAAACGGTTGCAAGTGGTATGATTGAAAATGAACCAGGTAAAATATCCCCCGAGTTATCTTCAGGTGTAGATAGTAAGAGCCAGATCAGTGCGGAGAAAGTGACGGGTATTATACCTGTGCAAAAAGGCTCTCCAGTTGCAGATACCTGTGAGTCCATAGATGTGAAAAGGGAGGATGTTATGTTACCTGCTTCTGGTAGTGCTTTGACGGTATCCAGGGACGAAAATACTAATAATGTGATGGCAGTTGAGAGCAAGCCTTCTGAGAAACGAATGGATCTGGATTCAGCAGTTGCAGATGGTGTTGATGAACGTTGTGAAGAGAATTCTGTTAGAAAAGAGCTCATTGGCAGTTCATCTCTTAACTCAGATATACCAATTACTTCTGAAAAGGAGAACGAAGTGCCCGAAACATGTGATTCTAATATAGAAGGAAAGAAATCTGTAGTTGCTGCAGAGTTGAATGCAGGCAATGCTAATACATCCCCAATTGCTAGTGGTTCTGATGCAGCTGTAAAACTGGACTTTGATTTAAATGAGGGATACCCCGTTGAAGATGCAGGCCAAGGGGATATTGTTAGACAGGAAGATCCGACCAGTTCATCTGCAGTTCATGTTCCTTGCCCATTGCCTTTTCCTATTCCATCCCTCTCAGGGGCCTTCCATGCTTCTATTACAGTGGCTTCTGCTACCAAAGGACCAGTTGTTCTACCAGAAAATCCATTGCGGAGTAAGGGGGAACTTGGATGGAAAGGTTCAGCTGCTACAAGTGCATTCCGGCCAGCCGAACCTAGGAAAAATGCTGAGATGCCATCAAATACTGGTGATATTCCTTCCGTTGAAACGACTTCAGTCAAACAAGGCCGTGCTCCTTTAGATTTTGATTTAAATGTGGCAGATGAAATAGGTTTTGAGGATGTTGGTTACCGGGGTTCCTTAGAGTCTGGAGCACATGACCGCAGTGCTGTGGGACTTGATCTTGATCTAAACAGGTTAGATGAGACTCCTGAAGCTGGATCTTTCGCTATGGGTAAAATGGACATTCCTTCTTTACCAAGTAAACAACCTTCGTTGTCCAGTGGGTTATCTAATGGCGGAAGTGTTTCAAGAGACTTTGATTTAAATAATGGGCCAGGCCTTGATGAAGTTAGTACTGAAGTCCCAGCTCGTAGTCTGCAGATGAAAGGTCCTGTGCCATTTTCAAGTTCTGTTCATGGCACCAGAACAAATAACGCTGAATTTGGGAACTATTCTTCTTGGTTTCCTCCGGGTAATTCGTATTCTGCAATTACTGTCCCGCCACTTTTGCCTGGTAGAGGGGAACAGAGTTATGTTGGTGCTTCTGGGCCACAGCGGATCATAGGTTCGACAGGCAGCTCACCCTTCAGTCCTGAAATGTACAGAGGGCCAGTACTTTCATCCTCTCCTGCTGTTGCATATCCACCTACAACCCCCTTTCCATATCCGGGATTTCCATTTGAAACCAATTTTCCATTATCTTCAAACGCCTTTTCTGGTTGTTCAACACCATTTATGGATTCATCAACTGTCAGTGGACTTTGCTTTCCTACTATGCCCTCGCAGCCGGTTGGGCCTGGAGGCATTGTCTCATCTACATATCCCCGCCCTTATGTTATGAGTCTTCCAGGCAGTACAAGTAACGTAATTCCCGACAGCAGAAAATGGGGAAGTCAGAGTTTGGATCTTAATTCAGGCCCTGGTGGTACGGACGCCGAGCGCAGAGATGACAGATTGCCTTCAGGGTTGAGGCAGATGCCCGTCCCCAGTCCACAAGCCTTGATGGAGGATCACTTGAAGATGTTTCAGATGGCAGGTGCATTAAAAAGAAAGGAACCTGATGGCGGTTGGGATGGAACTGATAGATTCAGTTACAAACATCCCCCTTCATGGCAGTAG 4770 0.4449 MYGFGGEKKWKHNRHMWPVPSNPTTVVTVSSPSKFICKDGRKIRVGDCALFKPPQDSPPFIGIIRKLIFNKEESPSLEVNWFYRPADLKLSKGIAVEAAPNEVFYSFHKDETHAASLLHPCKVAFLRKGVELPSGISAFVCRRVYDIDNNCLRWLTDKDFVNDQQEEVDHLLDKTKLEMHGAVQSGGRSPKPLNGPTSTQSLKSSSDNIQNSSSFGVQGKGKKRERGDQGSDSSKKERLFKVEVGDSGQFRLEMLRTEIARITEKGGLVDFEGVEKFVQLMQPDSADKKIDLAGRTMLVDVISLTEHYDCLGWFVQLRGLPVLDEWLQEVHKGKIGDGNVDKSEEFLLALLRALDKLPVNLHALQTCNVGKSVNNLRSHKNSEIQRKARSLVDTWKKRVEAEMNMTDTKPGSTRAVSWPTKPSPSDVSHSGNRRTGGSSENVAKSSPIQPSASKNSQSKHNSGEVLSKFSSSPGSTKSMTASVGSNTKDQNVKLIVGATTSDLPLTPIKEERSSSSSQSQNNSRSCSSEHAKSSTAGSISGSKIPGNASRSRKSSNGIHGAGVAVVLKDHSSAKNSTRNSPSDKVSPTRMSHEKPSDQPLSDQGHNQRLIVRLPNTGRSPSRVASGGTFEEPAITCGKTSPPADKNENQDRRVKAKTDCLQTHVSNVMNDASNAKEITGCDEAKCSPRVDERCRANEDGDKVAETSKTTSSSTGFVSRSGQTYDASLSPMNALVESCVKFSEASSSVSPGDDGMNLLASVAAGEMSRCENVSPLPSPERKSPAADESSSGNDRHSFEAAGRTQRQSDGGATGEHPVNTLQFKNNSRHLVTMVSRDFSDGEAVSSSCVEKTGDGKKQVNFSTTDAIQNTEGSCLRPDTKEDTSETVFPGRKESHAEAGGAEGFHERRESGTQWPKNSTSPGSKKLRTSSFDDDQKTDNKDGGLTEHGKMLVSETVASGMIENEPGKISPELSSGVDSKSQISAEKVTGIIPVQKGSPVADTCESIDVKREDVMLPASGSALTVSRDENTNNVMAVESKPSEKRMDLDSAVADGVDERCEENSVRKELIGSSSLNSDIPITSEKENEVPETCDSNIEGKKSVVAAELNAGNANTSPIASGSDAAVKLDFDLNEGYPVEDAGQGDIVRQEDPTSSSAVHVPCPLPFPIPSLSGAFHASITVASATKGPVVLPENPLRSKGELGWKGSAATSAFRPAEPRKNAEMPSNTGDIPSVETTSVKQGRAPLDFDLNVADEIGFEDVGYRGSLESGAHDRSAVGLDLDLNRLDETPEAGSFAMGKMDIPSLPSKQPSLSSGLSNGGSVSRDFDLNNGPGLDEVSTEVPARSLQMKGPVPFSSSVHGTRTNNAEFGNYSSWFPPGNSYSAITVPPLLPGRGEQSYVGASGPQRIIGSTGSSPFSPEMYRGPVLSSSPAVAYPPTTPFPYPGFPFETNFPLSSNAFSGCSTPFMDSSTVSGLCFPTMPSQPVGPGGIVSSTYPRPYVMSLPGSTSNVIPDSRKWGSQSLDLNSGPGGTDAERRDDRLPSGLRQMPVPSPQALMEDHLKMFQMAGALKRKEPDGGWDGTDRFSYKHPPSWQ* 1590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0162 1589 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 308 412 IPR035441 -
Mtr6g0162 1589 MobiDBLite consensus disorder prediction 705 720 - -
Mtr6g0162 1589 MobiDBLite consensus disorder prediction 401 485 - -
Mtr6g0162 1589 ProSiteProfiles TFIIS N-terminal domain profile. 321 402 IPR017923 -
Mtr6g0162 1589 MobiDBLite consensus disorder prediction 785 800 - -
Mtr6g0162 1589 MobiDBLite consensus disorder prediction 1506 1546 - -
Mtr6g0162 1589 MobiDBLite consensus disorder prediction 503 557 - -
Mtr6g0162 1589 MobiDBLite consensus disorder prediction 1198 1232 - -
Mtr6g0162 1589 MobiDBLite consensus disorder prediction 925 945 - -
Mtr6g0162 1589 MobiDBLite consensus disorder prediction 837 872 - -
Mtr6g0162 1589 PANTHER BAH DOMAIN-CONTAINING PROTEIN 1 1589 - -
Mtr6g0162 1589 MobiDBLite consensus disorder prediction 767 823 - -
Mtr6g0162 1589 MobiDBLite consensus disorder prediction 570 586 - -
Mtr6g0162 1589 MobiDBLite consensus disorder prediction 506 556 - -
Mtr6g0162 1589 CDD TFIIS_I 331 400 - -
Mtr6g0162 1589 MobiDBLite consensus disorder prediction 696 720 - -
Mtr6g0162 1589 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1589 - -
Mtr6g0162 1589 MobiDBLite consensus disorder prediction 569 650 - -
Mtr6g0162 1589 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 274 403 IPR035441 -
Mtr6g0162 1589 MobiDBLite consensus disorder prediction 1506 1523 - -
Mtr6g0162 1589 SMART TFS2_5 327 401 IPR003617 GO:0005634
Mtr6g0162 1589 MobiDBLite consensus disorder prediction 1303 1321 - -
Mtr6g0162 1589 MobiDBLite consensus disorder prediction 873 910 - -
Mtr6g0162 1589 MobiDBLite consensus disorder prediction 1291 1321 - -
Mtr6g0162 1589 MobiDBLite consensus disorder prediction 219 238 - -
Mtr6g0162 1589 MobiDBLite consensus disorder prediction 801 823 - -
Mtr6g0162 1589 SMART BAH_4 41 156 IPR001025 GO:0003682
Mtr6g0162 1589 MobiDBLite consensus disorder prediction 190 218 - -
Mtr6g0162 1589 MobiDBLite consensus disorder prediction 406 485 - -
Mtr6g0162 1589 MobiDBLite consensus disorder prediction 600 623 - -
Mtr6g0162 1589 Pfam TFIIS helical bundle-like domain 350 399 IPR017923 -
Mtr6g0162 1589 ProSiteProfiles BAH domain profile. 41 156 IPR001025 GO:0003682
Mtr6g0162 1589 MobiDBLite consensus disorder prediction 837 978 - -
Mtr6g0162 1589 MobiDBLite consensus disorder prediction 180 238 - -
Mtr6g0162 1589 MobiDBLite consensus disorder prediction 1567 1589 - -
Mtr6g0162 1589 Gene3D - 25 246 IPR043151 -
Mtr6g0162 1589 Pfam BAH domain 42 147 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0162 Mtr-Chr6 1905153 1912629 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Mtr6g0162 BAH 7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0162 - - gmx:112998769 2187.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0162 6 1905153 1912629 Mtr6g0162 6 1905153 1912629 ECH