Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0149 ATGTCAGAAACTATGTATCCTAAGTTGTTATTTGAACATACCCATTTAAGAATGTCTTTGATTAATCATCATCAAATTTATCAAAAAGATGGTTACTTTATAAATTTTCCACCACCATCATCACAATCTTCATCAAGTTCTTCAACAACATCAACAGCATCAGGAACAACAGCACCATCTTCATCTTCTAGTACTAAGATTAGTCCAGCTGTTCTTTTCATCATAGTGGTTCTTGCTGTTTTGTTTTTCATATCTGGTTTACTTCATTTGCTTGTTAGATTTCTCATAAAGCATCCATCTTCATCAAGTTCTTCTAATAGACAACATCATAATGAAATTTCAACTTCTGATGCACTTCAAAGACAGCTACAACAGCTTTTTCATCTTCATGATTCTGGTTTAGATCAAGCTTTTATTGATGCACTACCTGTTTTTCAATTCAAGGAGATTGTTGGTTTGAATGAGCCTTTTGATTGTGCTGTTTGTTTGTGTGAGTTTACTGAGAAAGACAAGCTAAGATTGTTACCTATGTGTAGCCATGCTTTTCATATAAGTTGTATAGATACTTGGCTACTTTCAAACTCTACTTGTCCTCTTTGTAGAGGAACACTTCAAACTAATGGATTTTCTATTGAAAATCCGATATTCGATTTCGATGATCTTAGGGAAGATGATGGTTGTCCTTGTAATGGAGAGAATAGATTTGGTACTAGACAAAAAGAAATTGTTGTTGATGAAGTTGTAGATAAAGGGGTTTTGCCAGTTCGACTCGGGAAATTCAAGAAGACGAATGTGGAAGTCGGTCGAGAGAATGAAGAAGTAGGGGAAACAAGTAGTAGTAATTTGGATGCAAGAAGATGTTATTCAATGGGATCTTATCAATATGTGGTTGGAAATTCAGAGTTAAGGGTAGCCTTAAACCATGAGAGTATAACTCATCATGATACAAGGATTATCAAAGGAATTGAAAATGGTGTTGAGAGTGATTTGGAAGGAAAGAAGATTAGTAATGTTAGTAAAGGTGAAAGTTTTTCTATTTCCAAGATTTGGTTATGGCCAAGAAAGGGAAAATTTTCTTCTAGTTCTTTAGAAGCTCATAATGGAATGACATTGCCATCTTATCTTAACAAAGATTTGCAGAATCATGGTGTATGA 1155 0.342 MSETMYPKLLFEHTHLRMSLINHHQIYQKDGYFINFPPPSSQSSSSSSTTSTASGTTAPSSSSSTKISPAVLFIIVVLAVLFFISGLLHLLVRFLIKHPSSSSSSNRQHHNEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQFKEIVGLNEPFDCAVCLCEFTEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLQTNGFSIENPIFDFDDLREDDGCPCNGENRFGTRQKEIVVDEVVDKGVLPVRLGKFKKTNVEVGRENEEVGETSSSNLDARRCYSMGSYQYVVGNSELRVALNHESITHHDTRIIKGIENGVESDLEGKKISNVSKGESFSISKIWLWPRKGKFSSSSLEAHNGMTLPSYLNKDLQNHGV* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0149 384 SUPERFAMILY RING/U-box 138 206 - -
Mtr6g0149 384 CDD RING-H2_PA-TM-RING 158 201 - -
Mtr6g0149 384 MobiDBLite consensus disorder prediction 43 64 - -
Mtr6g0149 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 208 IPR013083 -
Mtr6g0149 384 PANTHER RING-H2 FINGER PROTEIN ATL47-RELATED 35 364 - -
Mtr6g0149 384 Pfam Ring finger domain 158 201 IPR001841 -
Mtr6g0149 384 ProSiteProfiles Zinc finger RING-type profile. 159 201 IPR001841 -
Mtr6g0149 384 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 35 364 - -
Mtr6g0149 384 SMART ring_2 159 200 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0149 Mtr-Chr6 1777297 1780269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0149 61 362 C3H Transcription Factor Family AT2G18650 41.369 1.35e-58 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0149 - - gmx:100787206 487.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0149 6 1777297 1780269 Mtr6g0149 6 1777297 1780269 ECH