Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0144 ATGGAATCAGGTATATTGATTTTGATTGGAGCAGCAACAGTAGGGGCTATTTTGATATCATTTATCACTGCATACATCATTTATCTTAGATTCTTCAGATTAGCCTCACTACAAAATAAAGTGACATTTGGAAATTTGTTAAAGAAAATTTCTTGTCCAAAAATTTCTATCAAGGAAGTGTATGCTGCCACCAACAATCTCAATGAAATGAATATCATTGGGAAAGGAACTTCAGGTAAGGTCTATAAAGGTACAATGAAAAATAATCAGCAAGTTGCAGTGAAGCACATAATCAATGATGATGGAAATATAGAAACTTTTGTGAGAGAAGTTACAAGTCTATCTCATGTCAAGCACCAAAATCTTGTTTCTTTGCTTGGCTGTTGTGTTGATGGAGATGAATGTCTTCTTATCTATGAACTATGTCCAAATGGAAGTCTTTCAGAATGGCTATTTGGCAAGAACAAGGTGCTTTCATGGATAAAGAGGCTAGAAATTGCAATTGATAGTGCTAGAGGTGTTTGGTTTTTGCACACATATGAAGGAGGCTGCATTGTTCATCGTGACATCAAGCCAACAAATATCCTTCTTGGGTCAAACTTTGAAGCAAAACTATCAGATTTTGGATTATCTAAACTTATTGAGATAGGTGAAACATATGCTAGTTCAGAAGTGAGAGGGACTTTTGGATATGTGGATCCTGAATACCAAAGCAACCACCATGTAAATTCATCTGGTGATGTTTACAGTTTTGGCATGGTACTTCTACAAATTCTCTCTGGAAAGAGGGTCATAAATTTGAAACTGAAAAGACCAATGTCACTTAGTAAAATGGCAAAAACATTCACTAGGAATGGTAGCATCACAGAATTTGCTGATCCTAGACTTGAAGGAAATTATTCTGAAGAAGCATTTGATTTTACACTTCAATTGGCTCTATCATGCACATCCCTTGACCAACAAAGACCATCCATGGAACAAGTTGTCAAAACACTAGAAGAGGCCTTATTGATTTCAAAGGGAAGGAAGAATTTTACTAAAGAAACTCTAGAAGATCTTAGTATTCCAATTGGTCCATGA 1080 0.3565 MESGILILIGAATVGAILISFITAYIIYLRFFRLASLQNKVTFGNLLKKISCPKISIKEVYAATNNLNEMNIIGKGTSGKVYKGTMKNNQQVAVKHIINDDGNIETFVREVTSLSHVKHQNLVSLLGCCVDGDECLLIYELCPNGSLSEWLFGKNKVLSWIKRLEIAIDSARGVWFLHTYEGGCIVHRDIKPTNILLGSNFEAKLSDFGLSKLIEIGETYASSEVRGTFGYVDPEYQSNHHVNSSGDVYSFGMVLLQILSGKRVINLKLKRPMSLSKMAKTFTRNGSITEFADPRLEGNYSEEAFDFTLQLALSCTSLDQQRPSMEQVVKTLEEALLISKGRKNFTKETLEDLSIPIGP* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0144 359 ProSitePatterns Protein kinases ATP-binding region signature. 73 95 IPR017441 GO:0005524
Mtr6g0144 359 PANTHER OS01G0253100 PROTEIN 4 343 IPR045271 GO:0004714|GO:0006468
Mtr6g0144 359 ProSiteProfiles Protein kinase domain profile. 67 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g0144 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Mtr6g0144 359 Pfam Protein kinase domain 69 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g0144 359 SUPERFAMILY Protein kinase-like (PK-like) 49 333 IPR011009 -
Mtr6g0144 359 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 4 343 - -
Mtr6g0144 359 SMART serkin_6 67 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g0144 359 Gene3D Phosphorylase Kinase; domain 1 33 141 - -
Mtr6g0144 359 Gene3D Transferase(Phosphotransferase) domain 1 142 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0144 Mtr-Chr6 1690949 1694273 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0144 59 348 Receptor kinase-like Gene Family AT2G28970 42.034 2.98e-61 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Mtr6g0144 Pkinase 1.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0144 - - mtr:MTR_6g007690 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0144 6 1690949 1694273 Mtr6g0144 6 1690949 1694273 ECH