Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0142 ATGGCATCTATTATAGCTATAGTACTAATATTTGTGGGGCTAGTGTTTTATGTCCTATTGCGTATGTGTCTTCCTTATGGGATTTACAGGATTATGAGAGTTGATAGGGGAAGAAGAAGCCTTTCCAAAGTTGATTTAGAGAAGCTTCCATGTTATGATTATGTTGCAAAAGAAAATGGAAGTAACCCTTTAGATTGTGCAATTTGTTTGGAGAATTTCACTATTGGGGATAAGTGTAGATTGTTGCCTATTTGTGAGCACAATTTTCATGCTCAATGTGTGGATCAATGGCTTTTGAGGAATTCCATTTGTCCAATTTGTAGATCTATGGTTGGTTCTCATAGTGGAGACAAAGTTGTTATAGGTAACAATGGAAGAGAAAGCATAGAAAGTGGCTCATCTAGAAATGTTGTTATAGAATTAAGAGAAAATATTCCAACATTAGAAGTAGAATCACAAGAGCACTAA 468 0.3504 MASIIAIVLIFVGLVFYVLLRMCLPYGIYRIMRVDRGRRSLSKVDLEKLPCYDYVAKENGSNPLDCAICLENFTIGDKCRLLPICEHNFHAQCVDQWLLRNSICPICRSMVGSHSGDKVVIGNNGRESIESGSSRNVVIELRENIPTLEVESQEH* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0142 155 CDD RING-H2_PA-TM-RING 65 108 - -
Mtr6g0142 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 116 IPR013083 -
Mtr6g0142 155 SUPERFAMILY RING/U-box 57 113 - -
Mtr6g0142 155 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 143 - -
Mtr6g0142 155 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 143 - -
Mtr6g0142 155 SMART ring_2 66 107 IPR001841 -
Mtr6g0142 155 Pfam Ring finger domain 65 108 IPR001841 -
Mtr6g0142 155 ProSiteProfiles Zinc finger RING-type profile. 66 108 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0142 Mtr-Chr6 1680771 1681651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0142 37 127 Rapid Response to Elicitors AT3G16720 35.165 3.24e-17 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0142 - K15692 mtr:MTR_6g007680 319.701