Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0141 ATGGTGTTTTTGGTCATATTTCATGCATGTGTTTCTGAGTGGTTTTCTAGAAGAGGAGGAAGCGGAGCAATGATTGATAGGGGAAGAAGAAGAATTTCCAAAATTGATTTGGAGAATCTTCCATGTTATGATTATGTTGTTGATCATAGAACTAGCACTATTGATTGTGCAATTTGCTTGGAGAATTTCACTATTGGGGATAAATGTAGATTGTTACCTATTTGCAAGCATAGCTTTCATGCTCAATGTGTGGATCAATGGCTTTTGAAGCATCCCATTTGTCCAATTTGTAGATCTATGGTTGGTTCTCATAGTGGAGACAAAGTTGTTATAGGTAACAATGGAAGATAA 351 0.3618 MVFLVIFHACVSEWFSRRGGSGAMIDRGRRRISKIDLENLPCYDYVVDHRTSTIDCAICLENFTIGDKCRLLPICKHSFHAQCVDQWLLKHPICPICRSMVGSHSGDKVVIGNNGR* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0141 116 SUPERFAMILY RING/U-box 39 103 - -
Mtr6g0141 116 SMART ring_2 56 97 IPR001841 -
Mtr6g0141 116 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 26 116 - -
Mtr6g0141 116 ProSiteProfiles Zinc finger RING-type profile. 56 98 IPR001841 -
Mtr6g0141 116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 107 IPR013083 -
Mtr6g0141 116 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 26 116 - -
Mtr6g0141 116 Pfam Ring finger domain 55 98 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0141 Mtr-Chr6 1671510 1671860 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0141 37 99 C3H Transcription Factor Family AT2G18650 47.692 9.36e-19 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0141 - K15692 mtr:MTR_6g007670 193.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0141 6 1671510 1671860 Mtr6g0141 6 1671510 1671860 ECH