Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0139 ATGATCATGGCGGAACTAACCGATTCCACCGCCGCCGGTAACAACCTTCCGCCGCCGCAACAACCTCCACAACAAATTGACACGCGTTCAATCCTCTGCATCGACCTTAACGAGATCCCTTCACCTTCTTCTTCCTTCGTTGAAACCCTACCTGACTTCACCGTCGACATCGTTCGTACTTATCACGAAAATCCCGCTCCTCCTCCCGGTGGTCCTGCGCCTCTTCCTGGCGGTGTCACTTCCTGTGCTGTTTGTTCTAAGTCCGGCGCCGGTGGTTTGGTGTGTGATGGATGTGAACGGAGTTTTCATTTGGCGTGTGCTGGAGTTCGCGGTGGAAGAATTGGAGCGGCGAGTATAGGAGAGTGGGTGTGTGGTGAGTGTTTAGCGGGGGGTGTGAAAAGTAAAAGATGGCCGTTAGGTGTGAAGAGTAAACAGTTGCTAGATATTAATGCTTCTCCGCCTAGTGATGTTGATGGAGAGGAGTTGCATGAATCGAGAAAGCACGCTATGGGTGATCAATCTTTTGCTGCCAATCAATTTGGTGCTTCAGTGACATATTCAACCTTCAATAACGGGAGTGTGGTTGGCTTCCAAAGGGCATCTGGAGCTGTGACACGTCCTGTTAGAGTGGGTTTTGAGGATATATTGAATCACACCCAATCAATGGCTAGAAGCTTTGAGGAAGTACCATCTCAGACTCATGGCCCAAATGAGTTAATTTTGCAGGCTCTTAGAGATTTTATATCTGAAAGGCATGGTGTATTGGTGGAAGGTTGGCGAGTAGATCTTAGACCATCAATGGCCGGCTCTGACATGTATGCAGTTTACTGTGCACCTGATGGAAAGATATTCGATTCTGTGTATGAAGTAGCTAATTATCTGGGGCTACCGTCTGGCTACAATTCTATAGAATCTGAAGTAAGAAATGAAATGTCTCTTTCTTCTGGTGGGCCTCACCTATCCAGAAAAAGGAAGTCTTCTAGAACTCTGGCAGCCAATGGTTTTGCGGAAAAGCAGGGAACCTTTGTCAATAGTAATTATAAGGATTGTTCTTCTGATGGTTTAAGCATGGAACATGTGAATGCTCAGGGAACCGCCCTAAAAGCCACTGAGATTAGAAGAAAAGAGAATGGTCACTCCGACCCTCATCAGTTTGCTGACGAACTTCCTCTGCAGTTTAAGGACTTCTCTGTTCTTTCTTTGGGAAAAGTTGATGGGAGACCTTCATATTATGATGTTAACCTTATCTTTCCTGTGGGTTATAAATCTTGTTGGCATGATAAGATTACTGGCTCTCTTTTTACGTGCGAAGTTTTGGATGGGGGTGATTCTGGACCTATATTTAGGATTAAAAGGTGTTCATGTTCGGAATTTCCTATTCCAGATGGGTCAACCATCCTTTCAATGCACAATCGTTGTCAATTTGCGAGCGAAACCAATGAAGGTCAGAGAGAGACTAATGATAGTATGGATTTAGACGGTGATGAAAGTATCCAGATGATGCTTTTAGAACCTTGTGCACCAACAGAAGATGACATCTTGAGTTGTGTTGTCAGTTGCTCAAGTGAAGCATATGTATCAGAAGGATTAAGGCCAGTTGTTGGTTCCATTCAATATAATACTGGATACTCATTTTCTGATACTATGAATTTTTGTGATGAAATTGGTCAAATTTTGGTGGAAGAGCGGTCCCCATTCTCAGCATGGAGAGTTATTTCTCAAAAGTTGGTCAATGCTTGCAAGGATATCTGCAAGAAGAACGGAACTTTTAAATTCTATTGTAAACATGTTGAAAGTGAAATGGGCTTACATAGATGGGATTTAAGGAATAGCGAAAGTGATACCCACTTCACTTCGTTGGATAAATTTTGTGGTTCACCTGGATCTGTCAGCATTCCAGACACAATTTATGCAGACAGTGACGTGAAAGACCTGTATGAGCTCTTAGAGAAGTGGTTGGAGCAGGATAGATTTGGACTAGATGCTGAATTTGTCCAAGAAATTTTGGAACCGCTTCTTGGTGTGCAAGACTGTTTGCAGTATGAACGTCTTGGTAGTAGAAACAATAGCTCTTCATTGCCAACAGTGGAAAACGGTTACCTGGTGGTTGATTGTAAAGGTCAATCTAAATATCAGGATGAAGTAATTCAAGGTTTATATAGAAGGCCTAAGAAGGCAAGATTGACCGAGTACGTTAAGGAAAACCGATGTCCACCTCCTGGGAAACCACTATGCTCCAGAGCTCCTACTGAACTCATTGGTGACATTTTTCAGGTTTGGGATCTTTTAGAGAGATTCAATGAAATCCTAGACCTGAAAGAACCATTGTTCTTAGAAGAGCTCGAGAAGGAACTTATCAACCCATGGTTCAATGAGTTAGATTTCCCTGAGAAATCTGACAGGGGAATGGGTGGAAGTTCACGAGGGGGTGATGGTGATTGCCGATTAATATCTGAAGCCTGTCCATCAGGTTCCACAGGAGCTTCTTCCTATGTCAGATGCTTTGGTGCGTCTTTGACTAAAGCTCACAGTTCACTACTAAGAGTGCTAATAGGTGAACTGCAATCGAAAGTGGCTGCTCTGGTGGATCCAAATTCTGAACCTGGAGAGGCTCGGACAAGACGGGGAAGAAGGAAAGACATGGATAGTGCAGTTCCACGGACCAAGATCAATATGCTTCCGATTAATGAATTGACTTGGCCAGAACTAGCGCGTAGATATATCTTGGCTTTCTTGTCAATGGACGGTAACCTGGAGTCTGCGGAGATTACTGCCCGGGAAAGTGGTAAAGTATTTCGTTGCTTAAGAGGGGATGGTGGTTTGCTGTGTGGTTCCCTTCCTGGTGTGGTTGGGATGGAAGCTGATGCATTGTTGCTTGCGGAGGCTACGAAGAAGATTTTTGGTTCTTTGAGCAGAGAAAAAGATGTACTCATCCTAGAAGAAGAGGAGTCTGATGCAAATGGTTCTTCTGAAGCTCAATTGGCGAATGATGGTAATATTCCTGAATGGGCACAAGTGCTGGAACCTGTCAGAAAACTACCAACAAATGTGGGAACCCGAATCAGAAGGTGTGTTCATGCAGCTCTAGAAAAGAATCCGCCTGATTGGGCAAGGGAAATACTGGAGCACTCGGTTAGCAAGACAGTGTACAAGGGCAATGCATCTGGACCAACAAAGAAAGCAGTTGTTGCATTATTGGATGATGTAACTGGTGGAGTGCAGCAGAATCCCAACAAGGGAAGGAAAAAGAAATTTTTTATATCTATTTCTGACATTATTATGAAACAATGCCGCATTGTATTACGTCGCGCAGCTGCTTTAGATGATTCGAAAGTTTTTTGCAATTTGCTGGGAAGAAAATTAACAAATTCTTCTGACAATGATGATGAGGGGCTTCTTGGAACTCCAGCTATGGTGGCCCGCCCTCTTGACTTCCGGACTATTGATCTAAGATTGGCTTCTGGAGCTTATGGTGGATCACATGAAGCTTTTCTCGAGGACGTACGTGAGCTGTGGAGCAATGTTCGTGTTGCTTTTGGGGATCAACCTGATTTAGTTGAACTGTCAGAAAAATTATCCCAGAATTTTGAAAGTTTATACAATGAGGAGGTTGTCACCTACGTGCAAAAGTTTACAGACTATGCTGAAGTGGGATGCATAAATGCTGAAATGAAAAAAGAAGTTCAGGCTTTTATTGCTTCATCAAATGAGATTCCGAAAGCCCCTTGGGATGAGGGAGTCTGTAAAATTTGTGGCATTGATAGGGATGATGACAGTGTTTTACTGTGTGATACTTGTGACGCTGAGTATCATAAATATTGCTTGAACCCTCCTCTTGCAAGGATCCCTGAAGGAAACTGGTACTGTCCATCTTGTATTGGTGGTAAACATGCAACTCAAGATCTCACAGAACGAGCACAGCTTACTGGAAAACGTAGAAGTAAAAAATTCCAGGGACAAGTTAATTGTCTTTACTTGGATGCGTTGACTCATTTATCATCTGTAATTGAAGAAAAAGAATATTGGGAGTACAGTGTGGGAGAGAGAACGCTCCTTCTCAAGTTTTTATGTGATGAGTTGCTCAATTCTTCCCTGATACGACAGCAGCTTGAGCAATGTTCAGAGTTGTCTGCTGAATTAAATCAGAAGTTGCGTGGACTTTCTGTAGAGTGGAAAAACCTGAAAATTAAGGAAGACGTTTTATCCACAAAAGCTGCCAAATTTGGTACATTGTCACAATGTACCACTGGGGAAGTTGGTCTTAAGGAAGGGTTCACATCTTTGTTCTCAAATACTAGTAAATGTCTGGTTAAGCCACATGCTACAACCACCAATCCTAGTGGTCTTGGGGTATTTGATGACAGTCTACCTTCAGAAGAGATTCCCAAAGAGAAGTGTAGGTTCAATAGTGTTGATAAAAGCATATCTGTGACACATTCAAATTCTGATAGCCAAAATATGAATTCCATAGGACAGCTTAAGACTGTTCCTGTGGCTGTGGAGTTTCAATGTACAGATAAATCCCCCAAGTCTTTTCCATTCTCAAATCATATGCCTCAAGAAATAAATGGTTACAGTGAAGGACAATGTGTGCCTGTTGAAGTTTCCCAAAATGCTGTCAATGAGTCGGAACCATACCACCTTGAGCTCAATGCCGTCAAGCGTAATATCTCACTACTGCATGAATCTATAAATAGCGTAGGATCACAGCTTCTGAAGCTCCCTGTTCGTCGGGAACTTTTGGGTATTGATTCCATCGGCAGACTGTACTGGGCTTTGGCTACACTTAGAGGACGATCACGTATAGTTGTTGATGCAAGCGCTGTTGTTCAGCATGGAAGAGGATTGTCAGTTAGCAAAGATTCTGGAGAGAAGCTTTCTGCTCTGCAGCATTGTAAATTATCTGAGAAGGATAACTATAAGATGTTAGGGCTGATGAAGGACTGCTCTCCTTTGATGTCCCAACCACTTAATGCGTTAGCCAATAGTTCACCGTGGATTGTTTATGAAACTGATTCAGAAATCGAGGAGCTATTGGGTTGGTTAGATGATTATGACCCTAAAGAAAAAGAACTGAGAGATTCCATTATGCTGGGGCCAAAATATAGATCTCAAGAGTTTATTAATGCACACACTGAAGGTCAGGTTGAGGACCAAGGACCTGTTTATTTGCCAAGAAATACAGCACCTAACTCTCTTGTTACGAAGGCCACTTCTTTGCTGGAAAAGAATTACGGCCCCTTCTTTGATTTGGATACTGCTGAGGGTTTGAAGAATCAAAATAAAAAGGCCAGAACAACTAATGATGAAAAGTTGTATAGGTGTGAGTGCCTAGAACCTATATGGCCTTCTAGGAAACATTGCTTGTATTGCCACAAAACCTTTTTGAGCGATGTGGAGTTTGAGGGACACAATGGTGGAAAATGTAAAGCAGGACTTATGGCGTTGGGGAGGAATAAGGATAAAAATGGGTCTTCTAAAGGAAGAAAGAACTTGAAATGTGATACCTCACATGAAAAATCCAGAGCTGACACAGAAACAGATGGAACCTCAATCAATGGATGTTCTTCTCTAAATTCGAGATTGACTAAATTTTCAAATGAAAACCCCTCTTGCCCATTTAACTTTGAAGATACATGCGCAAAGTTTGTGACAAATGATTCCAACAAGGAACTTGTCAGAGAAATTGGTCTTATTGGTTCAGATGGTGCCCCATCCTTTGTGCCTTCCGTATCTCCTTTTGTTAGTGATTATACACAAGCCTTAACCATAAAGGATGTTGGCGTTGTTGGTGGTGCATCAAAAGCTTCAGAAAGCCAGGTTTCTCAGGAAAACACTGACGGAGCTGGCACATGCCATGACCATAAATCAGGCAAATCTACAGAAAGTTTAGCTGCAAATAGAAGCAACAAAGCAGGAAATTCCAACAAATCATCTTTGGGAGAACAAAGAGATGGGAAGCTATCTATTTGTAGTCCTGCTTCAGATAAGGGAGTTGATGGTTGCTGTGTGGTTCCTTTGTCCTCCTTGAGACCATTAGTTGGAAAAATTTCTCATATTTTGAAGCAACTAAAGATTAATCTACTTGATATGGATGCTGCACTTCCGAAAGTTGCTCTAAGACCATCAAAGGCACAGTTGGACAGAAGACAGGCCTGGCGTGCATTTGTTAAATCTGCAATGACTATATATGAGATGATCCAGGCAATAATTACACTGGAGGATATGATTAAGACGGAGTTCTTAAAGAATGACTGGTGGTACTGGTCATCATTCTCAGCTGCTGCCAAATCTTCTACTTTGCCTTCTCTTGCTCTTCGCATATACTCCCTTGATTCAGCCATTATGTATGAGAAAATGCCTAATTCAAGTTTAGCTGAGAGCTCTGATCCTCCTGCCGTAGCGGAACCGAAGCCAGTGATCACGGTGGATGCAGATAAATCCAAAGGAAGCCGGAAGTCAAACAGGAAAAGGAAGGAATTGGATGGTTAA 6492 0.4253 MIMAELTDSTAAGNNLPPPQQPPQQIDTRSILCIDLNEIPSPSSSFVETLPDFTVDIVRTYHENPAPPPGGPAPLPGGVTSCAVCSKSGAGGLVCDGCERSFHLACAGVRGGRIGAASIGEWVCGECLAGGVKSKRWPLGVKSKQLLDINASPPSDVDGEELHESRKHAMGDQSFAANQFGASVTYSTFNNGSVVGFQRASGAVTRPVRVGFEDILNHTQSMARSFEEVPSQTHGPNELILQALRDFISERHGVLVEGWRVDLRPSMAGSDMYAVYCAPDGKIFDSVYEVANYLGLPSGYNSIESEVRNEMSLSSGGPHLSRKRKSSRTLAANGFAEKQGTFVNSNYKDCSSDGLSMEHVNAQGTALKATEIRRKENGHSDPHQFADELPLQFKDFSVLSLGKVDGRPSYYDVNLIFPVGYKSCWHDKITGSLFTCEVLDGGDSGPIFRIKRCSCSEFPIPDGSTILSMHNRCQFASETNEGQRETNDSMDLDGDESIQMMLLEPCAPTEDDILSCVVSCSSEAYVSEGLRPVVGSIQYNTGYSFSDTMNFCDEIGQILVEERSPFSAWRVISQKLVNACKDICKKNGTFKFYCKHVESEMGLHRWDLRNSESDTHFTSLDKFCGSPGSVSIPDTIYADSDVKDLYELLEKWLEQDRFGLDAEFVQEILEPLLGVQDCLQYERLGSRNNSSSLPTVENGYLVVDCKGQSKYQDEVIQGLYRRPKKARLTEYVKENRCPPPGKPLCSRAPTELIGDIFQVWDLLERFNEILDLKEPLFLEELEKELINPWFNELDFPEKSDRGMGGSSRGGDGDCRLISEACPSGSTGASSYVRCFGASLTKAHSSLLRVLIGELQSKVAALVDPNSEPGEARTRRGRRKDMDSAVPRTKINMLPINELTWPELARRYILAFLSMDGNLESAEITARESGKVFRCLRGDGGLLCGSLPGVVGMEADALLLAEATKKIFGSLSREKDVLILEEEESDANGSSEAQLANDGNIPEWAQVLEPVRKLPTNVGTRIRRCVHAALEKNPPDWAREILEHSVSKTVYKGNASGPTKKAVVALLDDVTGGVQQNPNKGRKKKFFISISDIIMKQCRIVLRRAAALDDSKVFCNLLGRKLTNSSDNDDEGLLGTPAMVARPLDFRTIDLRLASGAYGGSHEAFLEDVRELWSNVRVAFGDQPDLVELSEKLSQNFESLYNEEVVTYVQKFTDYAEVGCINAEMKKEVQAFIASSNEIPKAPWDEGVCKICGIDRDDDSVLLCDTCDAEYHKYCLNPPLARIPEGNWYCPSCIGGKHATQDLTERAQLTGKRRSKKFQGQVNCLYLDALTHLSSVIEEKEYWEYSVGERTLLLKFLCDELLNSSLIRQQLEQCSELSAELNQKLRGLSVEWKNLKIKEDVLSTKAAKFGTLSQCTTGEVGLKEGFTSLFSNTSKCLVKPHATTTNPSGLGVFDDSLPSEEIPKEKCRFNSVDKSISVTHSNSDSQNMNSIGQLKTVPVAVEFQCTDKSPKSFPFSNHMPQEINGYSEGQCVPVEVSQNAVNESEPYHLELNAVKRNISLLHESINSVGSQLLKLPVRRELLGIDSIGRLYWALATLRGRSRIVVDASAVVQHGRGLSVSKDSGEKLSALQHCKLSEKDNYKMLGLMKDCSPLMSQPLNALANSSPWIVYETDSEIEELLGWLDDYDPKEKELRDSIMLGPKYRSQEFINAHTEGQVEDQGPVYLPRNTAPNSLVTKATSLLEKNYGPFFDLDTAEGLKNQNKKARTTNDEKLYRCECLEPIWPSRKHCLYCHKTFLSDVEFEGHNGGKCKAGLMALGRNKDKNGSSKGRKNLKCDTSHEKSRADTETDGTSINGCSSLNSRLTKFSNENPSCPFNFEDTCAKFVTNDSNKELVREIGLIGSDGAPSFVPSVSPFVSDYTQALTIKDVGVVGGASKASESQVSQENTDGAGTCHDHKSGKSTESLAANRSNKAGNSNKSSLGEQRDGKLSICSPASDKGVDGCCVVPLSSLRPLVGKISHILKQLKINLLDMDAALPKVALRPSKAQLDRRQAWRAFVKSAMTIYEMIQAIITLEDMIKTEFLKNDWWYWSSFSAAAKSSTLPSLALRIYSLDSAIMYEKMPNSSLAESSDPPAVAEPKPVITVDADKSKGSRKSNRKRKELDG* 2164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0139 2163 MobiDBLite consensus disorder prediction 1820 1850 - -
Mtr6g0139 2163 SUPERFAMILY FYVE/PHD zinc finger 1233 1297 IPR011011 -
Mtr6g0139 2163 ProSiteProfiles FYR domain FYRN motif profile. 388 441 IPR003888 GO:0005634
Mtr6g0139 2163 PANTHER OS02G0192300 PROTEIN 28 2163 - -
Mtr6g0139 2163 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1329 1371 IPR028942 -
Mtr6g0139 2163 ProSiteProfiles Zinc finger PHD-type profile. 79 130 IPR019787 -
Mtr6g0139 2163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 133 IPR013083 -
Mtr6g0139 2163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1232 1318 IPR013083 -
Mtr6g0139 2163 SMART PHD_3 81 128 IPR001965 -
Mtr6g0139 2163 SMART PHD_3 1247 1293 IPR001965 -
Mtr6g0139 2163 MobiDBLite consensus disorder prediction 2123 2163 - -
Mtr6g0139 2163 ProSiteProfiles Bromodomain profile. 1138 1186 IPR001487 GO:0005515
Mtr6g0139 2163 SUPERFAMILY FYVE/PHD zinc finger 67 128 IPR011011 -
Mtr6g0139 2163 MobiDBLite consensus disorder prediction 1935 1986 - -
Mtr6g0139 2163 MobiDBLite consensus disorder prediction 1 25 - -
Mtr6g0139 2163 CDD PHD1_Lid2p_like 1247 1292 - -
Mtr6g0139 2163 MobiDBLite consensus disorder prediction 1822 1846 - -
Mtr6g0139 2163 Pfam Methyl-CpG binding domain 246 297 IPR001739 GO:0003677
Mtr6g0139 2163 Pfam Bromodomain 1136 1190 IPR001487 GO:0005515
Mtr6g0139 2163 ProSitePatterns Zinc finger PHD-type signature. 82 127 IPR019786 -
Mtr6g0139 2163 Coils Coil 1370 1390 - -
Mtr6g0139 2163 CDD Bromodomain 1139 1200 - -
Mtr6g0139 2163 SUPERFAMILY Bromodomain 1082 1202 IPR036427 GO:0005515
Mtr6g0139 2163 Gene3D - 389 498 - -
Mtr6g0139 2163 ProSiteProfiles Zinc finger PHD-type profile. 1245 1295 IPR019787 -
Mtr6g0139 2163 Pfam PHD-finger 1247 1293 IPR019787 -
Mtr6g0139 2163 ProSitePatterns Zinc finger PHD-type signature. 1248 1292 IPR019786 -
Mtr6g0139 2163 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 28 2163 - -
Mtr6g0139 2163 Gene3D - 1090 1211 IPR036427 GO:0005515
Mtr6g0139 2163 MobiDBLite consensus disorder prediction 1962 1985 - -
Mtr6g0139 2163 MobiDBLite consensus disorder prediction 2142 2163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0139 Mtr-Chr6 1640326 1654514 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0139 27 2163 C2H2 Transcription Factor Family AT3G01460 44.694 0.0 1666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr6g0139 Bromodomain 5.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0139 K22768 - gmx:100820223 2971.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0139 6 1640326 1654514 Mtr6g0139 6 1640326 1654514 ECH