Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0138 ATGGAGTCTGGTCGTCTTTACTTTGATTCTTCTGCTTGTCGTGGGAATAACATGAACATGCTGTTTCTTGGAAATGCTGATCTTGGTTTTCGAGGAAGGTCAATGATGAGCATGGAGGAAGGCTCAAAGAGGAGACCTTTCTTTAGCTCACCTGATGAACTGTATGATGAGGAGTACTACGAGGAGCAGTCACCGGAGAAGAAGCGCCGCCTCACTTCCGAGCAGGTCCATATGTTGGAGAAGAGCTTTGAGGAAGAGAACAAACTTGAGCCAGAGAGGAAAACCCAGTTGGCCAAGAAACTAGGATTGCAACCTAGGCAGGTGGCTGTATGGTTTCAGAACCGTAGGGCTAGATGGAAGACAAAACAACTTGAAAGAGATTATGATGTTCTTAAGTCTTCCTATGATTCCCTACTTTCAACATATGATTCCATTAATAAGGAGAATGAGAAACTCAAATCTGAGGTGGTATCCTTAAATGAGAAGCTTCAAGTGCAAGCTAAAGATATGCTTGAAGAACCTTTGTCAGAAAAGAAAGCTGATCCACTTCCAGTGGACATAGCTCAGATTTTCAGCATCAAGGTGGATGACCACATGAGTTCTGGAAGCGTTGGAAGTGCAGTGGTGGACGAGAGTAGCCCCCGTGTCGTTGGTGTCATTGTTGACAGTGTCGATTCGTACTTTCCAGCTGACAACTATGCTGGATGTGTGGCTCCTATTGAAAGAGTTCAATCAGAGGAAGATGATGGGAGTGATGATGGGAGGAACTACTTTGATGTGTTTGTTGCATCTGAAACTGAGCAACATAACCATGAAGAGGGAGAGGCACTGAATTGGTGGGTAATATGTATTATGTTGCATAATTAA 867 0.4394 MESGRLYFDSSACRGNNMNMLFLGNADLGFRGRSMMSMEEGSKRRPFFSSPDELYDEEYYEEQSPEKKRRLTSEQVHMLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDSLLSTYDSINKENEKLKSEVVSLNEKLQVQAKDMLEEPLSEKKADPLPVDIAQIFSIKVDDHMSSGSVGSAVVDESSPRVVGVIVDSVDSYFPADNYAGCVAPIERVQSEEDDGSDDGRNYFDVFVASETEQHNHEEGEALNWWVICIMLHN* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0138 288 SUPERFAMILY Homeodomain-like 56 124 IPR009057 -
Mtr6g0138 288 SMART HOX_1 65 126 IPR001356 GO:0003677
Mtr6g0138 288 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 260 - -
Mtr6g0138 288 PRINTS Lambda-repressor HTH signature 93 102 IPR000047 GO:0003677
Mtr6g0138 288 PRINTS Lambda-repressor HTH signature 102 118 IPR000047 GO:0003677
Mtr6g0138 288 Gene3D - 60 129 - -
Mtr6g0138 288 ProSiteProfiles 'Homeobox' domain profile. 62 122 IPR001356 GO:0003677
Mtr6g0138 288 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 260 IPR045224 GO:0003700
Mtr6g0138 288 Coils Coil 135 169 - -
Mtr6g0138 288 Pfam Homeodomain 67 120 IPR001356 GO:0003677
Mtr6g0138 288 CDD homeodomain 67 123 IPR001356 GO:0003677
Mtr6g0138 288 Pfam Homeobox associated leucine zipper 122 164 IPR003106 GO:0006355|GO:0043565
Mtr6g0138 288 ProSitePatterns 'Homeobox' domain signature. 97 120 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0138 Mtr-Chr6 1636368 1639631 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0138 1 280 Homeobox Transcription Factor Family AT3G01470 57.343 2.06e-97 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr6g0138 Homeodomain 2.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0138 K09338 - gmx:100797836 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0138 6 1636368 1639631 Mtr6g0138 6 1636368 1639631 ECH