Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0084 ATGGCTGCTACAGCAACTGCCGCAGTGGGTCCACGGTATGCCCCAGCAGATCCTACACTTCCCAAACCATGGAAGGGTCTTGTGGATGGGAAGACTGGCTATCTTTACTTTTGGAATCCTGAGACTAATGTCACTCAGTATGAAAGGCCTTCAAGCTCAGCTGCTCCACTGAAAACTTCTTCAGTGCCTAGCTCTTCTGTCCAGGTTCAGCAATCATCTCAAGGGCGTGGCCGGAGTCCTGATTTCAGTGATCGGTATGATAGGAATGGAAATGGTGGGTCAAATGAAGGTGGATCCCGGAACCATCAGAGTTCCAAAGGTGATAGTTTTAGCTCTCATAATAATGTTGCAAATGGAACACCTGCTGCTGGAAATGGTAGTTCTATCAAAAGTCAAGTACCATTGGAGACCGGACCTGCATTATCTCCAGATGCTTATAGACGGCGTCATGAGATCACTGTTACTGGAGATAATGTGCCTCCCCCTGTTACATCATTTGCGTCTTCTGGTTTTCCATCGGAGATTCTTAGAGAGGTACAAAATGCTGGGTTCTCAGCCCCAACGCCAATTCAGGCACAATCGTGGCCCATTGCACTTCAAAGTAAAGATATAGTTGCCATTGCTAAAACAGGTTCAGGGAAAACCTTGGGGTATTTACTTCCAGCCTTTATTCACCTCAAGCGTACTAATAATAATGCCAAAATGGGCCCCACTGTGTTGGTACTTTCACCAACAAGGGAATTGGCAACACAAATTCAAGATGAAGCTGTGAAGTTTAGTAAAACATCAAGAATTGCCTGCACTTGTTTGTATGGAGGAGCACCAAAGGGTCCTCAATTGAAAGATATTGACCGGGGAGCAGATATTGTGGTAGCCACTCCTGGTCGCTTGAATGATATTCTTGAGATGAGGAGAATCAGTCTTCATCAGGTCTCTTATCTAGTGCTAGACGAGGCAGACAGGATGCTGGACATGGGTTTTGAACCTCAAATTAGGAAGATTGTGAATGGGGTGCCTGCTCGCAGGCAAACTCTCATGTTTACTGCAACATGGCCTAAGGAGGTTAGGAGAATTGCAGCTGATCTGCTGGTTAATCCTGTCCAGGTGAACATTGGCAATGTAGACGAGCTTGTTGCTAACAAGTCTATTACTCAGCATATTGAAGTTTTGACATATGTGGAGAAACAGCGACGACTGGAAACTATTTTGCGGTCACAGGATCAAGGGTCAAAGATAATTATTTTCTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTAATCTTACTCGCCAGTTTGGAGCTGCTGCTATTCACGGGGATAAATCCCAGGCTGATAGGGATCATGTGTTGAATCAGTTTCGAAGCGGAAGGACTCCTGTGCTTGTAGCCACAGATGTTGCAGCTCGTGGACTGGACGTCAAAGACATTAGAGTGGTTGTCAACTTCGACTTCCCTACAGGAGTTGAAGATTATGTTCATAGGATTGGTAGGACTGGGAGGGCTGGAGCTACTGGTATAGCTTACACTTTCTTTGGGGACCAGGATGCTAAACATGCTTCTGATCTCATCAAAATCTTAGAGGGTGCAAACCAGCGAGTTCCTCCAGAACTTCGTGAGTTGTCATCCAGGGGTGGTGGTGGCTTTAGCAGATCCAAATATCGTACTGGTGGTCGTGGTGACTCTGGATTCGGTGCTAAGAGTTATGACTCTGGGTATGGTGGAAAGGGTAATGATGGAGGATATGGCGGAAGAGTTGGTGATTCAAGTTATGGAGGAAGGGGTGGATATGGGTCTTCTGCTGCTTTTGGCCGAGGTGGAGGCCGTGGATTTGACAATGACTCACAGAGGAATGATCGTGATCAAAGCCCTGACAGAGGATCTAGCTGGAGTGATCGCTTTAAAACTGTCAATCGTGAACGCAGTCGTAGTCCTGTCAAGGGTGCACCATCTCAAAATGCCCCGGTCAGCTTTCACCAAGCAATGATGCAACGCAGTGGAGGTGGTAGTGATCGCAACAAGAGCTTTAGCCGGGAGAGAAGCCGCAGTCGGAGTCCTCAGAAAGGATGGGGAGGATCTTCAGGTGATGGAAGAAACGGTGGCTCTCATTCTTACAATGGAGAATTGGAGGAAGGGATGATTCCTGATGAAGATTGA 2157 0.4678 MAATATAAVGPRYAPADPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPSSSAAPLKTSSVPSSSVQVQQSSQGRGRSPDFSDRYDRNGNGGSNEGGSRNHQSSKGDSFSSHNNVANGTPAAGNGSSIKSQVPLETGPALSPDAYRRRHEITVTGDNVPPPVTSFASSGFPSEILREVQNAGFSAPTPIQAQSWPIALQSKDIVAIAKTGSGKTLGYLLPAFIHLKRTNNNAKMGPTVLVLSPTRELATQIQDEAVKFSKTSRIACTCLYGGAPKGPQLKDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNGVPARRQTLMFTATWPKEVRRIAADLLVNPVQVNIGNVDELVANKSITQHIEVLTYVEKQRRLETILRSQDQGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQADRDHVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNFDFPTGVEDYVHRIGRTGRAGATGIAYTFFGDQDAKHASDLIKILEGANQRVPPELRELSSRGGGGFSRSKYRTGGRGDSGFGAKSYDSGYGGKGNDGGYGGRVGDSSYGGRGGYGSSAAFGRGGGRGFDNDSQRNDRDQSPDRGSSWSDRFKTVNRERSRSPVKGAPSQNAPVSFHQAMMQRSGGGSDRNKSFSRERSRSRSPQKGWGGSSGDGRNGGSHSYNGELEEGMIPDED* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0084 718 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 315 323 IPR000629 -
Mtr6g0084 718 ProSiteProfiles WW/rsp5/WWP domain profile. 18 52 IPR001202 GO:0005515
Mtr6g0084 718 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 121 619 - -
Mtr6g0084 718 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 519 IPR027417 -
Mtr6g0084 718 MobiDBLite consensus disorder prediction 686 701 - -
Mtr6g0084 718 SMART ultradead3 183 386 IPR014001 -
Mtr6g0084 718 Gene3D - 374 544 IPR027417 -
Mtr6g0084 718 MobiDBLite consensus disorder prediction 88 135 - -
Mtr6g0084 718 MobiDBLite consensus disorder prediction 645 671 - -
Mtr6g0084 718 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 121 619 - -
Mtr6g0084 718 CDD WW 21 50 IPR001202 GO:0005515
Mtr6g0084 718 Gene3D - 15 65 - -
Mtr6g0084 718 MobiDBLite consensus disorder prediction 1 25 - -
Mtr6g0084 718 CDD SF2_C_DEAD 383 512 - -
Mtr6g0084 718 Pfam WW domain 20 50 IPR001202 GO:0005515
Mtr6g0084 718 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 164 192 IPR014014 GO:0003724
Mtr6g0084 718 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 385 542 IPR001650 -
Mtr6g0084 718 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 195 369 IPR014001 -
Mtr6g0084 718 SMART ww_5 19 52 IPR001202 GO:0005515
Mtr6g0084 718 MobiDBLite consensus disorder prediction 47 144 - -
Mtr6g0084 718 ProSitePatterns WW/rsp5/WWP domain signature. 24 50 IPR001202 GO:0005515
Mtr6g0084 718 Gene3D - 142 373 IPR027417 -
Mtr6g0084 718 MobiDBLite consensus disorder prediction 535 582 - -
Mtr6g0084 718 MobiDBLite consensus disorder prediction 598 718 - -
Mtr6g0084 718 SUPERFAMILY WW domain 12 51 IPR036020 GO:0005515
Mtr6g0084 718 Pfam DEAD/DEAH box helicase 188 357 IPR011545 GO:0003676|GO:0005524
Mtr6g0084 718 MobiDBLite consensus disorder prediction 612 642 - -
Mtr6g0084 718 MobiDBLite consensus disorder prediction 47 79 - -
Mtr6g0084 718 Pfam Helicase conserved C-terminal domain 395 503 IPR001650 -
Mtr6g0084 718 SMART helicmild6 423 503 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0084 Mtr-Chr6 832536 838718 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0084 162 541 Eukaryotic Initiation Factors Gene Family AT3G19760 33.594 1.08e-63 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0084 K12823 - gmx:100816455 1013.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0084 6 832536 838718 Mtr6g0084 6 832536 838718 ECH