Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0079 ATGGGTCGTGGAAGAGTATCTGTGGAATTTATTCAAAAGGAGAAATCTAGAAAGATATCATTGCAAACAAGAAAGATTGGTTTAATGACAAAAGTTGAGGAACTTTCCATTCTTTGTGATGTTGATGCTTGTGTGATTCTTTATGCTCCCAACTTTGAAGGCCAAGGGTATGATGAACCTGAAACATGGCCTAAAGACACAAAAGAGTTGCAAAGAATTCTTCAAAGGTACTATAACACAACAATTGATAGGCGTCTTAAGACCTATAATGTTCAAGAATATTTTAAAGAAAGGATGAAAAAAGTTGAATTTGAGATTTCCAAAGTGCGCAAAGAGAAGTTTAAGATGAAGTATCAAACTTGGGATGAATCATTCAATTTTCTTGAAGATGAACAATTAAGGTTATTTGCTAGCATCTTGGATTTTAAGCTTGATGCATGCAATCTAAAGATGAATATGCTAAAGGGAGATCTTAGGGGAAAATCAATAGCTCTTGAAACAAACAAGATTGATAACCTTAATAGTTCTCCTTACTTGGACTCAAATCCAAGTAGCTACTTCAATCTCCCGCAAAACAACATGTCTCAAGCACACATTTATCCACCATTGATGAATATCAATGATAAAAACCCTTTAGGGTTTTGGCCACTTATATCAGGACAAAGCTCTCAACCCTCTCATATGGTTTCAACTGCACAAAGCTCTCAACCTTCTCCTATGGTTTCTAGTGCACAAAGCTTCTACCATGTGGAGTCTTACCCTTGCAAGCAGATTGATGGTAATTGGACTCATCATGTTGATGGTAATGTTACATATCATCATCCCAAAATTGATATGAAGAAGGATGAAGCTGAAAATGATAAAATTCTGCCACCATATTATTACAATAGAAATGGAATGATAATGCAATCATATCCTATTGCTATGTCTACTCTTCCTTCTCAAAATCTTTCAAACCTATCCCATGAACATCTAAATAATGGATCCTATGATAAAGATGTTCTTCACACTCAAATGTTCAACTACATGGATGGAAGGAAGTAG 1044 0.3525 MGRGRVSVEFIQKEKSRKISLQTRKIGLMTKVEELSILCDVDACVILYAPNFEGQGYDEPETWPKDTKELQRILQRYYNTTIDRRLKTYNVQEYFKERMKKVEFEISKVRKEKFKMKYQTWDESFNFLEDEQLRLFASILDFKLDACNLKMNMLKGDLRGKSIALETNKIDNLNSSPYLDSNPSSYFNLPQNNMSQAHIYPPLMNINDKNPLGFWPLISGQSSQPSHMVSTAQSSQPSPMVSSAQSFYHVESYPCKQIDGNWTHHVDGNVTYHHPKIDMKKDEAENDKILPPYYYNRNGMIMQSYPIAMSTLPSQNLSNLSHEHLNNGSYDKDVLHTQMFNYMDGRK* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0079 347 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Mtr6g0079 347 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr6g0079 347 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr6g0079 347 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr6g0079 347 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mtr6g0079 347 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 3 256 - -
Mtr6g0079 347 SUPERFAMILY SRF-like 2 99 IPR036879 GO:0003677|GO:0046983
Mtr6g0079 347 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr6g0079 347 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mtr6g0079 347 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Mtr6g0079 347 PANTHER MADS BOX PROTEIN 3 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0079 Mtr-Chr6 767472 768515 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0079 1 249 Type I MADS-box Gene Family AT5G55690 29.572 3.87e-23 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr6g0079 SRF-TF 1.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0079 - - mtr:MTR_1g114730 402.134