Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0078 ATGGGTCGTGGAAGAATATCTATGGAACTCATTCAAAAGGAGAGATCTAGAAAGATAACATTGCAAAAGAGAAAGGATGGTTTAATAAAGAAAGCAAAGGAATTTTCCATTCTTTGTGATGTTGATGTTTGTTTGATCTTGTACGCTCCTAACCTTGAAGGCCAAGGATATATTGAACCTGAAACATGGCCTAAAGACAAAAGAGAGGTACAAAGAGTTCTTCAAAAGTACTATGAGACAACAATTGATAGGCGTCCTAAGACCTATGATGTTCAAGAATATTTTAAGGAAAGGATGAAAAAAGTTGAATTGGAGATTTACAAAGTGCGTAAAGAGAGGTTAAAGATGAAGTATCCAACTTGGGATGAATCTTACAATTCTTTTGGAAATGAACAATTGAGGTCATTTGTTAGGTTTTTGGATTCTAAGCTTGACGCATGTGATCAAAAGATGAATATGCGAAAAGATGAATCATACAAGGTCAATAACCTTATTAGTTCTCCTTACTTGACCTCAAATTCAGGTACCAACTTCAATCTCATGCATACCAACATATCTCAAGTTAAAATTTACTCTCCATTGATGAATATTTGTGATAAAAATCCCTTAGGGTTTTGGCCAATTCGATTGGGACAAAGCTCTCAACATTCTCTTATGGTTTCCAGTGCACAAAGCTCCTACTATTACCCTAGCAAGCATATTGATGCTAATGTTACCTATGATTCAAAAATCAGTATGAAGAAGAAGGATGAAGTTAAAAATGACAAAAACTTGCCATCATACTATTACAATGGAAATGCAATGATAATGCAATCATATCCTATTGCTATGCCTACTCCTCCTTTTCAGAATCTTGCAAACCTATCCCATGAATATCTACTTTATGGATCCTATGATATAGATAGTATTCAAGCTCAACTGTTCAACTCCAAGAATGGAACGAAGTAG 948 0.3481 MGRGRISMELIQKERSRKITLQKRKDGLIKKAKEFSILCDVDVCLILYAPNLEGQGYIEPETWPKDKREVQRVLQKYYETTIDRRPKTYDVQEYFKERMKKVELEIYKVRKERLKMKYPTWDESYNSFGNEQLRSFVRFLDSKLDACDQKMNMRKDESYKVNNLISSPYLTSNSGTNFNLMHTNISQVKIYSPLMNICDKNPLGFWPIRLGQSSQHSLMVSSAQSSYYYPSKHIDANVTYDSKISMKKKDEVKNDKNLPSYYYNGNAMIMQSYPIAMPTPPFQNLANLSHEYLLYGSYDIDSIQAQLFNSKNGTK* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0078 315 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 3 217 - -
Mtr6g0078 315 SUPERFAMILY SRF-like 2 98 IPR036879 GO:0003677|GO:0046983
Mtr6g0078 315 PANTHER MADS BOX PROTEIN 3 217 - -
Mtr6g0078 315 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr6g0078 315 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr6g0078 315 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr6g0078 315 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr6g0078 315 CDD MADS_SRF_like 2 79 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mtr6g0078 315 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Mtr6g0078 315 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Mtr6g0078 315 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0078 Mtr-Chr6 761569 762516 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0078 1 123 Type I MADS-box Gene Family AT5G55690 44.355 3.34e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr6g0078 SRF-TF 3.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0078 - - mtr:MTR_1g114730 375.17